Variant report

Variant	rs8177613
Chromosome Location	chr10:6023548-6023549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr10:6023359-6024011	K562	blood:	n/a	n/a
2	ZNF384	chr10:6023457-6024183	K562	blood:	n/a	n/a
3	MXI1	chr10:6023515-6023836	K562	blood:	n/a	n/a
4	CEBPD	chr10:6023295-6024020	K562	blood:	n/a	n/a
5	GATA1	chr10:6022840-6024153	K562	blood:	n/a	n/a
6	YY1	chr10:6023417-6023690	K562	blood:	n/a	n/a
7	CEBPB	chr10:6023538-6023881	K562	blood:	n/a	n/a
8	CEBPD	chr10:6023419-6023918	K562	blood:	n/a	n/a
9	CEBPB	chr10:6023495-6023875	K562	blood:	n/a	n/a
10	E2F6	chr10:6023463-6023654	K562	blood:	n/a	n/a
11	TRIM28	chr10:6023479-6024029	K562	blood:	n/a	n/a
12	NR2F2	chr10:6023495-6024097	K562	blood:	n/a	n/a
13	ZNF274	chr10:6023414-6023963	K562	blood:	n/a	n/a
14	PML	chr10:6023527-6024001	K562	blood:	n/a	n/a
15	GATA1	chr10:6023223-6023985	PBDE	blood:	n/a	n/a
16	RCOR1	chr10:6023179-6023954	K562	blood:	n/a	n/a
17	STAT5A	chr10:6023379-6023988	K562	blood:	n/a	n/a
18	BHLHE40	chr10:6023473-6024037	K562	blood:	n/a	n/a
19	TEAD4	chr10:6023376-6023971	K562	blood:	n/a	n/a
20	POLR2A	chr10:6023544-6023951	K562	blood:	n/a	n/a
21	MYC	chr10:6023516-6023877	K562	blood:	n/a	n/a
22	MAFK	chr10:6023487-6023869	K562	blood:	n/a	n/a
23	GATA2	chr10:6023470-6023936	K562	blood:	n/a	n/a
24	MAX	chr10:6023331-6024077	K562	blood:	n/a	chr10:6023936-6023947
25	EP300	chr10:6023514-6023926	K562	blood:	n/a	n/a
26	TAL1	chr10:6023342-6023974	K562	blood:	n/a	chr10:6023764-6023773 chr10:6023761-6023776 chr10:6023769-6023784 chr10:6023769-6023784 chr10:6023729-6023747 chr10:6023769-6023784
27	TEAD4	chr10:6023312-6024012	K562	blood:	n/a	n/a
28	CCNT2	chr10:6023485-6023854	K562	blood:	n/a	n/a
29	MYC	chr10:6023330-6023976	K562	blood:	n/a	chr10:6023936-6023947
30	MAX	chr10:6023458-6023703	K562	blood:	n/a	n/a
31	GATA2	chr10:6023389-6023985	K562	blood:	n/a	n/a
32	JUND	chr10:6023434-6023883	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:6018280..6021234-chr10:6022960..6024557,2	MCF-7	breast:
2	chr10:6023454..6025587-chr10:6029284..6031828,3	K562	blood:
3	chr10:6018052..6020391-chr10:6022296..6024852,3	MCF-7	breast:
4	chr10:6020440..6022335-chr10:6023498..6026826,3	MCF-7	breast:

Variant related genes	Relation type
IL15RA	TF binding region
ENSG00000134470	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11818885	1.00[ASN][1000 genomes]
rs12243993	1.00[ASN][1000 genomes]
rs12722484	1.00[ASN][1000 genomes]
rs12722486	1.00[ASN][1000 genomes]
rs12722505	1.00[ASN][1000 genomes]
rs28360488	1.00[ASN][1000 genomes]
rs28360493	1.00[ASN][1000 genomes]
rs3136611	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3136615	1.00[ASN][1000 genomes]
rs36055263	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41294605	1.00[ASN][1000 genomes]
rs41294659	1.00[ASN][1000 genomes]
rs41294663	1.00[ASN][1000 genomes]
rs41294681	1.00[ASN][1000 genomes]
rs41294907	1.00[ASN][1000 genomes]
rs41294937	1.00[ASN][1000 genomes]
rs41295047	1.00[ASN][1000 genomes]
rs41295093	1.00[ASN][1000 genomes]
rs41295115	1.00[ASN][1000 genomes]
rs55998002	1.00[ASN][1000 genomes]
rs56055806	1.00[ASN][1000 genomes]
rs56121791	1.00[ASN][1000 genomes]
rs56249263	1.00[ASN][1000 genomes]
rs58820784	1.00[ASN][1000 genomes]
rs61839723	1.00[ASN][1000 genomes]
rs61839726	1.00[ASN][1000 genomes]
rs62626315	1.00[ASN][1000 genomes]
rs62626320	1.00[ASN][1000 genomes]
rs62626323	1.00[ASN][1000 genomes]
rs62626344	1.00[ASN][1000 genomes]
rs7077401	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72777814	1.00[ASN][1000 genomes]
rs7893324	1.00[ASN][1000 genomes]
rs7898286	1.00[ASN][1000 genomes]
rs8177586	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177587	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177590	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177600	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177614	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177631	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177633	0.88[CEU][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177636	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8177694	1.00[ASN][1000 genomes]
rs8177755	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv1041261	chr10:5962635-6052196	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1050983	chr10:5963921-6052196	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8177613	IL2RA	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:6020400-6025800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:6020400-6029800	Weak transcription	Ovary	ovary
3	chr10:6020800-6025600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:6021000-6027800	Weak transcription	Adipose Nuclei	Adipose
5	chr10:6022200-6023800	Enhancers	Pancreas	Pancrea
6	chr10:6023200-6023800	Active TSS	Spleen	Spleen
7	chr10:6023200-6024000	Flanking Active TSS	K562	blood
8	chr10:6023400-6023800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links