Variant report
| Variant | rs28365690 |
|---|---|
| Chromosome Location | chr12:40464395-40464396 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:121)
| rs_ID | r2[population] |
|---|---|
| rs12368785 | 1.00[JPT][hapmap] |
| rs12368891 | 1.00[JPT][hapmap] |
| rs17442206 | 1.00[JPT][hapmap] |
| rs17442297 | 1.00[JPT][hapmap] |
| rs17442742 | 1.00[JPT][hapmap] |
| rs17442980 | 1.00[JPT][hapmap] |
| rs17443178 | 1.00[JPT][hapmap] |
| rs17443185 | 1.00[JPT][hapmap] |
| rs17443206 | 1.00[JPT][hapmap] |
| rs17443366 | 1.00[JPT][hapmap] |
| rs17443380 | 1.00[JPT][hapmap] |
| rs17443387 | 1.00[JPT][hapmap] |
| rs17443504 | 1.00[JPT][hapmap] |
| rs17458093 | 1.00[JPT][hapmap] |
| rs17458121 | 1.00[JPT][hapmap] |
| rs17458202 | 1.00[JPT][hapmap] |
| rs17458396 | 1.00[JPT][hapmap] |
| rs17458417 | 1.00[JPT][hapmap] |
| rs17458487 | 1.00[JPT][hapmap] |
| rs17458528 | 1.00[JPT][hapmap] |
| rs17458836 | 1.00[JPT][hapmap] |
| rs17461337 | 1.00[JPT][hapmap] |
| rs17465737 | 1.00[JPT][hapmap] |
| rs17465751 | 1.00[JPT][hapmap] |
| rs17465807 | 1.00[JPT][hapmap] |
| rs17465877 | 1.00[JPT][hapmap] |
| rs17466002 | 1.00[JPT][hapmap] |
| rs17483857 | 1.00[JPT][hapmap] |
| rs17483996 | 1.00[JPT][hapmap] |
| rs17484176 | 1.00[JPT][hapmap] |
| rs17489170 | 1.00[JPT][hapmap] |
| rs17489218 | 1.00[JPT][hapmap] |
| rs17489225 | 1.00[JPT][hapmap] |
| rs17489246 | 1.00[JPT][hapmap] |
| rs17489253 | 1.00[JPT][hapmap] |
| rs17489267 | 1.00[JPT][hapmap] |
| rs17489365 | 1.00[JPT][hapmap] |
| rs17489410 | 1.00[JPT][hapmap] |
| rs17489417 | 1.00[JPT][hapmap] |
| rs17489466 | 1.00[JPT][hapmap] |
| rs17489501 | 1.00[JPT][hapmap] |
| rs17489583 | 1.00[JPT][hapmap] |
| rs17489590 | 1.00[JPT][hapmap] |
| rs17489597 | 1.00[JPT][hapmap] |
| rs17489638 | 1.00[JPT][hapmap] |
| rs17489869 | 1.00[JPT][hapmap] |
| rs17490006 | 1.00[JPT][hapmap] |
| rs17490334 | 1.00[JPT][hapmap] |
| rs17490341 | 1.00[JPT][hapmap] |
| rs17490599 | 1.00[JPT][hapmap] |
| rs17490769 | 1.00[JPT][hapmap] |
| rs17490796 | 1.00[JPT][hapmap] |
| rs17490810 | 1.00[JPT][hapmap] |
| rs17518057 | 1.00[JPT][hapmap] |
| rs17518071 | 1.00[JPT][hapmap] |
| rs17518141 | 1.00[JPT][hapmap] |
| rs17518148 | 1.00[JPT][hapmap] |
| rs17518155 | 1.00[JPT][hapmap] |
| rs17518204 | 1.00[JPT][hapmap] |
| rs17518232 | 1.00[JPT][hapmap] |
| rs17518343 | 1.00[JPT][hapmap] |
| rs17518413 | 1.00[JPT][hapmap] |
| rs17518420 | 1.00[JPT][hapmap] |
| rs17518532 | 1.00[JPT][hapmap] |
| rs17518910 | 1.00[JPT][hapmap] |
| rs17519531 | 1.00[JPT][hapmap] |
| rs17519566 | 1.00[JPT][hapmap] |
| rs17519580 | 1.00[JPT][hapmap] |
| rs17519615 | 1.00[JPT][hapmap] |
| rs17519671 | 1.00[JPT][hapmap] |
| rs28365178 | 1.00[JPT][hapmap] |
| rs28365191 | 1.00[JPT][hapmap] |
| rs28365203 | 1.00[JPT][hapmap] |
| rs28365211 | 1.00[JPT][hapmap] |
| rs28365682 | 1.00[JPT][hapmap] |
| rs28370601 | 1.00[JPT][hapmap] |
| rs28370605 | 1.00[JPT][hapmap] |
| rs28370608 | 1.00[JPT][hapmap] |
| rs28370616 | 1.00[JPT][hapmap] |
| rs28370643 | 1.00[JPT][hapmap] |
| rs28370649 | 1.00[JPT][hapmap] |
| rs28370652 | 1.00[JPT][hapmap] |
| rs28370655 | 1.00[JPT][hapmap] |
| rs28370658 | 1.00[JPT][hapmap] |
| rs28370665 | 1.00[JPT][hapmap] |
| rs28370670 | 1.00[JPT][hapmap] |
| rs28370672 | 1.00[JPT][hapmap] |
| rs28370673 | 1.00[JPT][hapmap] |
| rs28370682 | 1.00[JPT][hapmap] |
| rs28370686 | 1.00[JPT][hapmap] |
| rs28370690 | 1.00[JPT][hapmap] |
| rs28370692 | 1.00[JPT][hapmap] |
| rs28370696 | 1.00[JPT][hapmap] |
| rs28370700 | 1.00[JPT][hapmap] |
| rs28370707 | 1.00[JPT][hapmap] |
| rs28370718 | 1.00[JPT][hapmap] |
| rs28370731 | 1.00[JPT][hapmap] |
| rs28370737 | 1.00[JPT][hapmap] |
| rs28370744 | 1.00[JPT][hapmap] |
| rs28370750 | 1.00[JPT][hapmap] |
| rs28370751 | 1.00[JPT][hapmap] |
| rs28370755 | 1.00[JPT][hapmap] |
| rs28370764 | 1.00[JPT][hapmap] |
| rs28370765 | 1.00[JPT][hapmap] |
| rs28370767 | 1.00[JPT][hapmap] |
| rs28370768 | 1.00[JPT][hapmap] |
| rs28370771 | 1.00[JPT][hapmap] |
| rs28370772 | 1.00[JPT][hapmap] |
| rs28370776 | 1.00[JPT][hapmap] |
| rs28370779 | 1.00[JPT][hapmap] |
| rs28370787 | 1.00[JPT][hapmap] |
| rs28370793 | 1.00[JPT][hapmap] |
| rs28370796 | 1.00[JPT][hapmap] |
| rs28370800 | 1.00[JPT][hapmap] |
| rs28370806 | 1.00[JPT][hapmap] |
| rs28370808 | 1.00[JPT][hapmap] |
| rs28370813 | 1.00[JPT][hapmap] |
| rs28370818 | 1.00[JPT][hapmap] |
| rs28370823 | 1.00[JPT][hapmap] |
| rs28370826 | 1.00[JPT][hapmap] |
| rs4405389 | 1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv558596 | chr12:40413698-40591117 | Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:40453800-40487400 | Weak transcription | Left Ventricle | heart |
| 2 | chr12:40457600-40471600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |
| 3 | chr12:40463200-40464600 | Enhancers | Ganglion Eminence derived primary cultured neurospheres | brain |
| 4 | chr12:40463400-40464600 | Enhancers | Cortex derived primary cultured neurospheres | brain |
| 5 | chr12:40463800-40464400 | Enhancers | Colon Smooth Muscle | Colon |
| 6 | chr12:40464000-40465000 | Enhancers | Rectal Smooth Muscle | rectum |
