Variant report

Variant	rs28370772
Chromosome Location	chr12:40407905-40407906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	12:40402537-40410050..12:40703633-40711447	GM12878	blood:
2	12:40402537-40410050..12:40497414-40501128	K562	blood:
3	12:40402537-40410050..12:40687302-40691796	GM12878	blood:
4	12:40402537-40410050..12:40793507-40812339	GM12878	blood:

Variant related genes	Relation type
ENSG00000188906	Chromatin interaction
ENSG00000151229	Chromatin interaction
ENSG00000205592	Chromatin interaction

rs_ID	r²[population]
rs12368785	1.00[JPT][hapmap]
rs12368891	1.00[JPT][hapmap]
rs17442206	1.00[JPT][hapmap]
rs17442297	1.00[JPT][hapmap]
rs17442742	1.00[JPT][hapmap]
rs17442980	1.00[JPT][hapmap]
rs17443178	1.00[JPT][hapmap]
rs17443185	1.00[JPT][hapmap]
rs17443206	1.00[JPT][hapmap]
rs17458093	1.00[JPT][hapmap]
rs17458121	1.00[JPT][hapmap]
rs17458202	1.00[JPT][hapmap]
rs17458396	1.00[JPT][hapmap]
rs17458417	1.00[JPT][hapmap]
rs17458487	1.00[JPT][hapmap]
rs17458528	1.00[JPT][hapmap]
rs17458836	1.00[JPT][hapmap]
rs17461337	1.00[JPT][hapmap]
rs17483857	1.00[JPT][hapmap]
rs17483996	1.00[JPT][hapmap]
rs17489170	1.00[JPT][hapmap]
rs17489218	1.00[JPT][hapmap]
rs17489225	1.00[JPT][hapmap]
rs17489246	1.00[JPT][hapmap]
rs17489253	1.00[JPT][hapmap]
rs17489267	1.00[JPT][hapmap]
rs17489365	1.00[JPT][hapmap]
rs17489410	1.00[JPT][hapmap]
rs17489417	1.00[JPT][hapmap]
rs17489466	1.00[JPT][hapmap]
rs17489501	1.00[JPT][hapmap]
rs17489583	1.00[JPT][hapmap]
rs17489590	1.00[JPT][hapmap]
rs17489597	1.00[JPT][hapmap]
rs17489638	1.00[JPT][hapmap]
rs17489869	1.00[JPT][hapmap]
rs17490006	1.00[JPT][hapmap]
rs17490334	1.00[JPT][hapmap]
rs17490341	1.00[JPT][hapmap]
rs17518057	1.00[JPT][hapmap]
rs17518071	1.00[JPT][hapmap]
rs17518141	1.00[JPT][hapmap]
rs17518148	1.00[JPT][hapmap]
rs17518155	1.00[JPT][hapmap]
rs17518204	1.00[JPT][hapmap]
rs17518232	1.00[JPT][hapmap]
rs17518343	1.00[JPT][hapmap]
rs17518413	1.00[JPT][hapmap]
rs17518420	1.00[JPT][hapmap]
rs17518532	1.00[JPT][hapmap]
rs17518910	1.00[JPT][hapmap]
rs28365178	1.00[JPT][hapmap]
rs28365191	1.00[JPT][hapmap]
rs28365203	1.00[JPT][hapmap]
rs28365682	1.00[JPT][hapmap]
rs28365690	1.00[JPT][hapmap]
rs28370601	1.00[JPT][hapmap]
rs28370605	1.00[JPT][hapmap]
rs28370608	1.00[JPT][hapmap]
rs28370616	1.00[JPT][hapmap]
rs28370643	1.00[JPT][hapmap]
rs28370649	1.00[JPT][hapmap]
rs28370652	1.00[JPT][hapmap]
rs28370655	1.00[JPT][hapmap]
rs28370658	1.00[JPT][hapmap]
rs28370665	1.00[JPT][hapmap]
rs28370670	1.00[JPT][hapmap]
rs28370672	1.00[JPT][hapmap]
rs28370673	1.00[JPT][hapmap]
rs28370682	1.00[JPT][hapmap]
rs28370686	1.00[JPT][hapmap]
rs28370690	1.00[JPT][hapmap]
rs28370692	1.00[JPT][hapmap]
rs28370696	1.00[JPT][hapmap]
rs28370700	1.00[JPT][hapmap]
rs28370707	1.00[JPT][hapmap]
rs28370718	1.00[JPT][hapmap]
rs28370731	1.00[JPT][hapmap]
rs28370737	1.00[JPT][hapmap]
rs28370744	1.00[JPT][hapmap]
rs28370750	1.00[JPT][hapmap]
rs28370751	1.00[JPT][hapmap]
rs28370755	1.00[JPT][hapmap]
rs28370764	1.00[JPT][hapmap]
rs28370765	1.00[JPT][hapmap]
rs28370767	1.00[JPT][hapmap]
rs28370768	1.00[JPT][hapmap]
rs28370771	1.00[JPT][hapmap]
rs28370776	1.00[JPT][hapmap]
rs28370779	1.00[JPT][hapmap]
rs28370787	1.00[JPT][hapmap]
rs28370793	1.00[JPT][hapmap]
rs28370796	1.00[JPT][hapmap]
rs28370800	1.00[JPT][hapmap]
rs28370806	1.00[JPT][hapmap]
rs28370808	1.00[JPT][hapmap]
rs28370813	1.00[JPT][hapmap]
rs28370818	1.00[JPT][hapmap]
rs28370823	1.00[JPT][hapmap]
rs28370826	1.00[JPT][hapmap]
rs4405389	1.00[JPT][hapmap]

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv899027	chr12:40388510-40428561	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40394000-40410800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr12:40394400-40448400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:40402200-40425600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr12:40405200-40408600	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr12:40405400-40408200	Enhancers	Stomach Mucosa	stomach
6	chr12:40405400-40445200	Weak transcription	K562	blood
7	chr12:40405600-40409000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:40405600-40409200	Weak transcription	Hela-S3	cervix
9	chr12:40405600-40410400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr12:40405600-40417000	Weak transcription	Lung	lung
11	chr12:40405800-40409000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:40405800-40409000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr12:40405800-40409000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr12:40405800-40409200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:40405800-40409200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:40405800-40409200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr12:40405800-40409400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr12:40405800-40409400	Weak transcription	Small Intestine	intestine
19	chr12:40405800-40410200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr12:40405800-40410800	Weak transcription	Aorta	Aorta
21	chr12:40405800-40410800	Weak transcription	Right Ventricle	heart
22	chr12:40405800-40411200	Weak transcription	NHLF	lung
23	chr12:40405800-40412800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr12:40405800-40414000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr12:40405800-40421000	Weak transcription	Left Ventricle	heart
26	chr12:40405800-40425800	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr12:40405800-40426000	Weak transcription	Pancreas	Pancrea
28	chr12:40406000-40409000	Weak transcription	A549	lung
29	chr12:40406000-40423200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr12:40406400-40410400	Enhancers	Fetal Intestine Large	intestine
31	chr12:40406600-40423200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr12:40406600-40425800	Weak transcription	Liver	Liver
33	chr12:40406800-40409200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr12:40406800-40409200	Weak transcription	NHDF-Ad	bronchial
35	chr12:40406800-40409600	Enhancers	Fetal Intestine Small	intestine
36	chr12:40406800-40410600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr12:40406800-40410800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr12:40406800-40410800	Weak transcription	Fetal Lung	lung
39	chr12:40406800-40410800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr12:40406800-40410800	Weak transcription	Right Atrium	heart
41	chr12:40407000-40409000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr12:40407000-40410600	Weak transcription	Colon Smooth Muscle	Colon
43	chr12:40407200-40409000	Weak transcription	Osteobl	bone
44	chr12:40407400-40410000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr12:40407600-40411200	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr12:40407800-40409400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr12:40407800-40426000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links