Variant report

Variant	rs28369687
Chromosome Location	chr9:97384703-97384704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97377917..97381579-chr9:97382484..97386312,5	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10993250	1.00[EUR][1000 genomes]
rs12000108	1.00[EUR][1000 genomes]
rs12000176	1.00[EUR][1000 genomes]
rs12000612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002713	1.00[EUR][1000 genomes]
rs12005954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12006551	1.00[EUR][1000 genomes]
rs12115356	1.00[EUR][1000 genomes]
rs2149721	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369689	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28369690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28382861	1.00[EUR][1000 genomes]
rs28382862	1.00[EUR][1000 genomes]
rs28402369	1.00[EUR][1000 genomes]
rs28402375	1.00[EUR][1000 genomes]
rs3864789	1.00[EUR][1000 genomes]
rs3864790	1.00[EUR][1000 genomes]
rs5018586	1.00[EUR][1000 genomes]
rs56852311	1.00[EUR][1000 genomes]
rs57746346	1.00[EUR][1000 genomes]
rs59268947	1.00[EUR][1000 genomes]
rs59707858	1.00[EUR][1000 genomes]
rs60065676	1.00[EUR][1000 genomes]
rs61032874	1.00[EUR][1000 genomes]
rs61465993	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7023425	1.00[EUR][1000 genomes]
rs7034833	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7036264	1.00[EUR][1000 genomes]
rs7044193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7851510	1.00[EUR][1000 genomes]
rs7853756	1.00[EUR][1000 genomes]
rs7856539	1.00[AMR][1000 genomes]
rs7856901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7861787	1.00[EUR][1000 genomes]
rs7862669	1.00[EUR][1000 genomes]
rs7871076	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
2	chr9:97374600-97392600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:97374600-97393400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr9:97375200-97385600	Weak transcription	Stomach Mucosa	stomach
5	chr9:97376200-97385800	Strong transcription	Liver	Liver
6	chr9:97381400-97389800	Weak transcription	Pancreas	Pancrea
7	chr9:97381400-97400400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:97381600-97401000	Weak transcription	Right Atrium	heart
9	chr9:97382600-97392800	Weak transcription	Lung	lung
10	chr9:97382600-97393000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr9:97382800-97387000	Weak transcription	Fetal Intestine Large	intestine
12	chr9:97382800-97387600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr9:97382800-97388200	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr9:97382800-97399400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr9:97383800-97390200	Strong transcription	Fetal Intestine Small	intestine
16	chr9:97384000-97386000	Enhancers	Fetal Muscle Leg	muscle
17	chr9:97384200-97385000	Enhancers	Primary T cells from cord blood	blood
18	chr9:97384200-97385000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
19	chr9:97384200-97385000	Enhancers	Fetal Thymus	thymus
20	chr9:97384200-97385200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr9:97384200-97385800	Enhancers	Fetal Lung	lung
22	chr9:97384200-97386000	Enhancers	Fetal Muscle Trunk	muscle
23	chr9:97384400-97384800	Genic enhancers	Gastric	stomach
24	chr9:97384400-97385000	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr9:97384400-97385200	Genic enhancers	Fetal Stomach	stomach
26	chr9:97384400-97387200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:97384600-97385000	Enhancers	Primary T killer memory cells from peripheral blood	blood
28	chr9:97384600-97385000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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