Variant report

Variant	rs5018586
Chromosome Location	chr9:97263644-97263645
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97245654..97249341-chr9:97260999..97264040,3	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10993250	1.00[EUR][1000 genomes]
rs12000108	1.00[EUR][1000 genomes]
rs12000176	1.00[EUR][1000 genomes]
rs12000612	1.00[EUR][1000 genomes]
rs12002008	1.00[EUR][1000 genomes]
rs12002713	1.00[EUR][1000 genomes]
rs12005954	1.00[EUR][1000 genomes]
rs12006551	1.00[EUR][1000 genomes]
rs12115356	1.00[EUR][1000 genomes]
rs2149721	1.00[EUR][1000 genomes]
rs28369686	1.00[EUR][1000 genomes]
rs28369687	1.00[EUR][1000 genomes]
rs28369690	1.00[EUR][1000 genomes]
rs28382861	1.00[EUR][1000 genomes]
rs28382862	1.00[EUR][1000 genomes]
rs28402369	1.00[EUR][1000 genomes]
rs28402375	1.00[EUR][1000 genomes]
rs3864789	1.00[EUR][1000 genomes]
rs3864790	1.00[EUR][1000 genomes]
rs56852311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57507244	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57746346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58993665	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59268947	1.00[EUR][1000 genomes]
rs59707858	1.00[EUR][1000 genomes]
rs60065676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60959298	1.00[EUR][1000 genomes]
rs61032874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61465993	1.00[EUR][1000 genomes]
rs61667419	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7023425	1.00[EUR][1000 genomes]
rs7034833	1.00[EUR][1000 genomes]
rs7036264	1.00[EUR][1000 genomes]
rs7044193	1.00[EUR][1000 genomes]
rs7851510	1.00[EUR][1000 genomes]
rs7853756	1.00[EUR][1000 genomes]
rs7856901	1.00[EUR][1000 genomes]
rs7861787	1.00[EUR][1000 genomes]
rs7862669	1.00[EUR][1000 genomes]
rs7871076	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv893594	chr9:97221463-97283226	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv614916	chr9:97245822-97273659	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv969761	chr9:97254596-97288069	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97261200-97272600	Weak transcription	Pancreas	Pancrea
2	chr9:97263000-97265600	Weak transcription	Hela-S3	cervix

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