Variant report

Variant	rs60065676
Chromosome Location	chr9:97226917-97226918
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10993250	1.00[EUR][1000 genomes]
rs12000108	1.00[EUR][1000 genomes]
rs12000176	1.00[EUR][1000 genomes]
rs12000612	1.00[EUR][1000 genomes]
rs12002008	1.00[EUR][1000 genomes]
rs12005954	1.00[EUR][1000 genomes]
rs12115356	1.00[EUR][1000 genomes]
rs2149721	1.00[EUR][1000 genomes]
rs28369686	1.00[EUR][1000 genomes]
rs28369687	1.00[EUR][1000 genomes]
rs28369690	1.00[EUR][1000 genomes]
rs28382861	1.00[EUR][1000 genomes]
rs28382862	1.00[EUR][1000 genomes]
rs28402369	1.00[EUR][1000 genomes]
rs28402375	1.00[EUR][1000 genomes]
rs3864789	1.00[EUR][1000 genomes]
rs3864790	1.00[EUR][1000 genomes]
rs5018586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56852311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57507244	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57746346	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58993665	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59707858	1.00[EUR][1000 genomes]
rs60959298	1.00[EUR][1000 genomes]
rs61032874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61465993	1.00[EUR][1000 genomes]
rs61667419	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7023425	1.00[EUR][1000 genomes]
rs7034833	1.00[EUR][1000 genomes]
rs7036264	1.00[EUR][1000 genomes]
rs7044193	1.00[EUR][1000 genomes]
rs7851510	1.00[EUR][1000 genomes]
rs7853756	1.00[EUR][1000 genomes]
rs7856901	1.00[EUR][1000 genomes]
rs7861787	1.00[EUR][1000 genomes]
rs7862669	1.00[EUR][1000 genomes]
rs7871076	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893592	chr9:96973995-97295269	Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1046906	chr9:96999227-97239809	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2761545	chr9:97025298-97356950	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv893593	chr9:97196979-97228918	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv893594	chr9:97221463-97283226	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97204400-97227000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:97220400-97227000	Weak transcription	Gastric	stomach
3	chr9:97222200-97227000	Weak transcription	Esophagus	oesophagus
4	chr9:97222600-97237800	Weak transcription	Stomach Mucosa	stomach
5	chr9:97224200-97227000	Weak transcription	Liver	Liver
6	chr9:97224200-97227000	Weak transcription	Psoas Muscle	Psoas
7	chr9:97224400-97227800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr9:97224600-97227000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr9:97225000-97227200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr9:97225200-97227000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:97225200-97227000	Weak transcription	Aorta	Aorta
12	chr9:97225200-97227000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr9:97225200-97227000	Weak transcription	Placenta	Placenta
14	chr9:97225200-97227400	Weak transcription	HUVEC	blood vessel
15	chr9:97225200-97228000	Weak transcription	HMEC	breast
16	chr9:97225400-97227000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:97225400-97227200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr9:97225400-97227200	Weak transcription	Thymus	Thymus
19	chr9:97225400-97228000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr9:97225400-97228200	Weak transcription	NHEK	skin
21	chr9:97225600-97227000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:97225600-97227000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr9:97225600-97227000	Weak transcription	Dnd41	blood
24	chr9:97225600-97227200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr9:97225600-97227400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr9:97225800-97227000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr9:97225800-97227200	Weak transcription	HSMMtube	muscle
28	chr9:97225800-97227600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr9:97225800-97227800	Weak transcription	HSMM	muscle

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