Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:97315630..97317501-chr9:97398483..97401293,2	MCF-7	breast:
2	chr9:97399286..97401961-chr9:97487355..97490023,2	MCF-7	breast:
3	chr9:97398090..97401026-chr9:97919610..97921770,2	MCF-7	breast:
4	chr9:97399443..97401665-chr9:97771079..97774076,2	MCF-7	breast:
5	chr9:97397667..97400545-chr9:97634464..97636466,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000231806	Chromatin interaction
ENSG00000148120	Chromatin interaction

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10993250	1.00[EUR][1000 genomes]
rs12000108	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000176	1.00[EUR][1000 genomes]
rs12000612	1.00[EUR][1000 genomes]
rs12002008	1.00[EUR][1000 genomes]
rs12002713	1.00[EUR][1000 genomes]
rs12005954	1.00[EUR][1000 genomes]
rs12006551	1.00[EUR][1000 genomes]
rs12115356	1.00[EUR][1000 genomes]
rs2149721	1.00[EUR][1000 genomes]
rs28369686	1.00[EUR][1000 genomes]
rs28369687	1.00[EUR][1000 genomes]
rs28369690	1.00[EUR][1000 genomes]
rs28382861	1.00[EUR][1000 genomes]
rs28382862	1.00[EUR][1000 genomes]
rs28402369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3864789	1.00[EUR][1000 genomes]
rs3864790	1.00[EUR][1000 genomes]
rs5018586	1.00[EUR][1000 genomes]
rs56852311	1.00[EUR][1000 genomes]
rs57746346	1.00[EUR][1000 genomes]
rs59268947	1.00[EUR][1000 genomes]
rs59707858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60065676	1.00[EUR][1000 genomes]
rs61032874	1.00[EUR][1000 genomes]
rs61465993	1.00[EUR][1000 genomes]
rs7023425	1.00[EUR][1000 genomes]
rs7034833	1.00[EUR][1000 genomes]
rs7036264	1.00[EUR][1000 genomes]
rs7044193	1.00[EUR][1000 genomes]
rs7851510	1.00[EUR][1000 genomes]
rs7853756	1.00[EUR][1000 genomes]
rs7856901	1.00[EUR][1000 genomes]
rs7861787	1.00[EUR][1000 genomes]
rs7862669	1.00[EUR][1000 genomes]
rs7871076	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv614918	chr9:97380597-97412037	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv893597	chr9:97380597-97463435	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97371400-97401000	Weak transcription	Spleen	Spleen
2	chr9:97381400-97400400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:97381600-97401000	Weak transcription	Right Atrium	heart
4	chr9:97394000-97400600	Weak transcription	Small Intestine	intestine
5	chr9:97394200-97400800	Weak transcription	Adipose Nuclei	Adipose
6	chr9:97395200-97401000	Weak transcription	Colonic Mucosa	Colon
7	chr9:97395600-97400400	Weak transcription	Stomach Mucosa	stomach
8	chr9:97395800-97400800	Weak transcription	Gastric	stomach
9	chr9:97396000-97400400	Weak transcription	Fetal Intestine Large	intestine
10	chr9:97398000-97400200	Flanking Active TSS	Liver	Liver
11	chr9:97399400-97400400	Active TSS	Duodenum Mucosa	Duodenum
12	chr9:97399400-97400400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr9:97399400-97400600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr9:97399800-97400600	Enhancers	Pancreas	Pancrea
15	chr9:97400000-97400600	Active TSS	Fetal Intestine Small	intestine

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