Variant report

Variant	rs7856901
Chromosome Location	chr9:97361925-97361926
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97360979..97363553-chr9:97393005..97395544,2	MCF-7	breast:
2	chr9:97333743..97336722-chr9:97359939..97362910,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10993250	1.00[EUR][1000 genomes]
rs12000108	1.00[EUR][1000 genomes]
rs12000176	1.00[EUR][1000 genomes]
rs12000612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002008	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12002713	1.00[EUR][1000 genomes]
rs12005954	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12006551	1.00[EUR][1000 genomes]
rs12115356	1.00[EUR][1000 genomes]
rs2149721	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369687	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369689	1.00[AMR][1000 genomes]
rs28369690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28382861	1.00[EUR][1000 genomes]
rs28382862	1.00[EUR][1000 genomes]
rs28402369	1.00[EUR][1000 genomes]
rs28402375	1.00[EUR][1000 genomes]
rs2993962	0.81[AFR][1000 genomes]
rs3864789	1.00[EUR][1000 genomes]
rs3864790	1.00[EUR][1000 genomes]
rs5018586	1.00[EUR][1000 genomes]
rs56852311	1.00[EUR][1000 genomes]
rs57746346	1.00[EUR][1000 genomes]
rs59268947	1.00[EUR][1000 genomes]
rs59707858	1.00[EUR][1000 genomes]
rs60065676	1.00[EUR][1000 genomes]
rs60959298	1.00[EUR][1000 genomes]
rs61032874	1.00[EUR][1000 genomes]
rs61465993	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61667419	1.00[EUR][1000 genomes]
rs7023425	1.00[EUR][1000 genomes]
rs7034833	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7036264	1.00[EUR][1000 genomes]
rs7044193	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7851510	1.00[EUR][1000 genomes]
rs7853756	1.00[EUR][1000 genomes]
rs7856539	1.00[AMR][1000 genomes]
rs7861787	1.00[EUR][1000 genomes]
rs7862669	1.00[EUR][1000 genomes]
rs7871076	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041195	chr9:97054795-97402378	Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	esv1840205	chr9:97202200-97366400	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
4	nsv466436	chr9:97343620-97369149	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv614917	chr9:97343620-97369149	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97347600-97374000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:97351800-97369200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:97356400-97365600	Weak transcription	Psoas Muscle	Psoas
4	chr9:97356600-97362400	Weak transcription	Fetal Intestine Small	intestine
5	chr9:97357000-97362000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:97357000-97362400	Weak transcription	Stomach Mucosa	stomach
7	chr9:97358000-97368800	Weak transcription	Gastric	stomach
8	chr9:97360600-97362400	Enhancers	HepG2	liver
9	chr9:97361200-97362800	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr9:97361800-97362000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle

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