Variant report

Variant	rs28381666
Chromosome Location	chr6:28782795-28782796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28774872..28779186-chr6:28780865..28786550,9	K562	blood:
2	chr6:28723977..28727923-chr6:28779903..28783132,3	K562	blood:
3	chr6:27112538..27114831-chr6:28781719..28783622,2	K562	blood:

Variant related genes	Relation type
ENSG00000197903	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484543	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2148007	0.85[EUR][1000 genomes]
rs2269553	0.82[EUR][1000 genomes]
rs28381660	0.80[AMR][1000 genomes]
rs28381661	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28381663	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28400868	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28400869	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28400870	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28743260	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4484511	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6909419	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs743847	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7763940	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7776376	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9257186	0.81[AMR][1000 genomes]
rs9257269	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257270	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9257274	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257280	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9257281	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9348814	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9368576	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9378107	0.81[AMR][1000 genomes]
rs9378149	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9393932	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9393933	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9404976	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv9558	chr6:28770281-28785058	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	esv3410540	chr6:28770455-28785112	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3322630	chr6:28770519-28785092	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv3486939	chr6:28770525-28785051	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	esv3486940	chr6:28770525-28785051	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	esv3403106	chr6:28770790-28785189	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv970724	chr6:28778144-28784760	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28780600-28782800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr6:28782400-28782800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:28782400-28783200	Bivalent Enhancer	HepG2	liver
4	chr6:28782400-28784000	Weak transcription	HMEC	breast
5	chr6:28782600-28782800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
6	chr6:28782600-28782800	Bivalent Enhancer	Brain Germinal Matrix	brain
7	chr6:28782600-28783000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr6:28782600-28783000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr6:28782600-28783000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
10	chr6:28782600-28783800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr6:28782600-28784000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
12	chr6:28782600-28784000	Enhancers	K562	blood

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