Variant report

Variant	rs28381660
Chromosome Location	chr6:28764817-28764818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28762168..28764957-chr6:28971752..28974125,2	K562	blood:

Variant related genes	Relation type
ENSG00000197935	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10484543	0.87[AMR][1000 genomes]
rs28381661	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs28381663	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs28381666	0.80[AMR][1000 genomes]
rs28400868	0.87[AMR][1000 genomes]
rs28400869	0.87[AMR][1000 genomes]
rs28743260	0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6909419	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7763940	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7776376	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9257149	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9257150	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9257157	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9257172	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9257175	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9257186	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257269	0.82[AMR][1000 genomes]
rs9257270	0.80[AMR][1000 genomes]
rs9257274	0.81[AMR][1000 genomes]
rs9257281	0.80[AMR][1000 genomes]
rs9348814	0.87[AMR][1000 genomes]
rs9368576	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9378107	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9378149	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9380090	0.84[AFR][1000 genomes]
rs9393932	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9393933	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9404976	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2621756	chr6:28762692-28779791	Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2322180	chr6:28764675-28780578	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28763400-28770600	Weak transcription	HMEC	breast
2	chr6:28763600-28765000	Active TSS	K562	blood
3	chr6:28764200-28765400	Enhancers	HepG2	liver
4	chr6:28764600-28770400	Weak transcription	GM12878-XiMat	blood

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