Variant report

Variant	rs9257175
Chromosome Location	chr6:28746945-28746946
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28745229..28748097-chr6:28908724..28910861,2	K562	blood:
2	chr6:28746343..28748629-chr6:28776362..28778668,2	K562	blood:
3	chr6:28746864..28751693-chr6:28754692..28757727,4	K562	blood:
4	chr6:28709319..28711119-chr6:28746197..28748161,2	K562	blood:
5	chr6:28739105..28742072-chr6:28746732..28748309,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10484543	0.80[AMR][1000 genomes]
rs1539584	0.84[AMR][1000 genomes]
rs2394130	0.82[ASN][1000 genomes]
rs28381660	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28381661	0.80[AMR][1000 genomes]
rs28381663	0.80[AMR][1000 genomes]
rs28400868	0.80[AMR][1000 genomes]
rs28400869	0.80[AMR][1000 genomes]
rs28743260	0.82[AMR][1000 genomes]
rs2893970	0.81[ASN][1000 genomes]
rs2893973	0.81[ASN][1000 genomes]
rs3869043	0.82[ASN][1000 genomes]
rs72844382	0.80[AMR][1000 genomes]
rs7763940	0.80[AMR][1000 genomes]
rs7776376	0.80[AMR][1000 genomes]
rs9257110	0.81[ASN][1000 genomes]
rs9257111	0.81[ASN][1000 genomes]
rs9257112	0.82[ASN][1000 genomes]
rs9257114	0.82[ASN][1000 genomes]
rs9257117	0.86[ASN][1000 genomes]
rs9257124	0.89[ASN][1000 genomes]
rs9257128	0.89[ASN][1000 genomes]
rs9257129	0.92[ASN][1000 genomes]
rs9257131	0.88[ASN][1000 genomes]
rs9257132	0.92[ASN][1000 genomes]
rs9257148	0.98[ASN][1000 genomes]
rs9257149	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9257150	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9257157	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9257168	0.96[ASN][1000 genomes]
rs9257172	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257185	0.93[ASN][1000 genomes]
rs9257186	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9348814	0.80[AMR][1000 genomes]
rs9368576	0.80[AMR][1000 genomes]
rs9378107	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9378149	0.80[AMR][1000 genomes]
rs9393932	0.80[AMR][1000 genomes]
rs9393933	0.80[AMR][1000 genomes]
rs9404976	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28745400-28747000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr6:28745400-28747200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
3	chr6:28746000-28747000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:28746600-28747000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:28746800-28749000	Weak transcription	K562	blood

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