Variant report

Variant	rs9257114
Chromosome Location	chr6:28705635-28705636
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28705003..28707799-chr6:28889865..28891695,2	K562	blood:
2	chr6:28694465..28699409-chr6:28701823..28706376,12	K562	blood:
3	chr6:28702781..28705852-chr6:28730775..28732422,3	K562	blood:
4	chr6:28704284..28707045-chr6:28723983..28725942,2	MCF-7	breast:
5	chr6:28705580..28707892-chr6:28755666..28757274,2	K562	blood:
6	chr6:28687230..28688788-chr6:28703405..28705827,2	K562	blood:
7	chr6:28705520..28707079-chr6:28973043..28974669,2	K562	blood:
8	chr6:28704393..28708100-chr6:28724005..28727294,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197935	Chromatin interaction
ENSG00000204713	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12660605	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1539584	0.88[ASN][1000 genomes]
rs2394130	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2893970	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2893973	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3869043	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56404349	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72844382	0.88[ASN][1000 genomes]
rs9257110	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9257111	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9257112	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9257115	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257117	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9257124	0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9257128	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9257129	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9257131	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9257132	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9257148	0.84[ASN][1000 genomes]
rs9257149	0.84[ASN][1000 genomes]
rs9257150	0.84[ASN][1000 genomes]
rs9257157	0.82[ASN][1000 genomes]
rs9257168	0.81[ASN][1000 genomes]
rs9257175	0.82[ASN][1000 genomes]
rs9348812	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9368571	0.88[ASN][1000 genomes]
rs9380085	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9380086	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9393928	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28704400-28705800	Weak transcription	HMEC	breast
2	chr6:28705000-28707200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
3	chr6:28705200-28705800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:28705200-28705800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:28705200-28706000	Active TSS	K562	blood
6	chr6:28705200-28706800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:28705200-28706800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
8	chr6:28705200-28706800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
9	chr6:28705200-28707000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
10	chr6:28705200-28707000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
11	chr6:28705200-28707000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr6:28705200-28707000	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:28705400-28705800	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
14	chr6:28705400-28706600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:28705400-28706800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:28705400-28707000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:28705400-28707000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
18	chr6:28705400-28707000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:28705600-28705800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:28705600-28706000	Weak transcription	Placenta	Placenta
21	chr6:28705600-28706000	Bivalent Enhancer	HepG2	liver
22	chr6:28705600-28710400	Weak transcription	A549	lung

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