Variant report

Variant	rs9257132
Chromosome Location	chr6:28722860-28722861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28701813..28704465-chr6:28720205..28723280,3	K562	blood:
2	chr6:28695559..28699343-chr6:28721391..28727067,6	K562	blood:
3	chr6:28715243..28717665-chr6:28720660..28723020,3	MCF-7	breast:
4	chr6:27859657..27862433-chr6:28721002..28723229,2	K562	blood:
5	chr6:28685640..28691299-chr6:28719887..28724041,7	K562	blood:
6	chr6:28722382..28725655-chr6:28783034..28786428,3	K562	blood:
7	chr6:28721787..28724398-chr9:131939083..131940744,2	MCF-7	breast:
8	chr6:28720936..28723199-chr6:28731913..28733640,2	K562	blood:
9	chr6:28722382..28724843-chr6:28784005..28786428,2	K562	blood:
10	chr6:28652217..28653747-chr6:28722642..28724791,2	K562	blood:
11	chr6:28721780..28723340-chr6:28835346..28836933,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000197153	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000188483	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12660605	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1539584	0.82[ASN][1000 genomes]
rs2394130	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2893970	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2893973	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3869043	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56404349	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72844382	0.82[ASN][1000 genomes]
rs9257110	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9257111	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9257112	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9257114	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9257115	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9257117	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9257124	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257128	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257129	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9257131	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9257148	0.94[ASN][1000 genomes]
rs9257149	0.93[ASN][1000 genomes]
rs9257150	0.93[ASN][1000 genomes]
rs9257157	0.92[ASN][1000 genomes]
rs9257168	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9257172	0.89[ASN][1000 genomes]
rs9257175	0.92[ASN][1000 genomes]
rs9257185	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9348812	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9368571	0.81[ASN][1000 genomes]
rs9380085	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9380086	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9393928	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28715400-28725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28715600-28724800	Weak transcription	HMEC	breast
3	chr6:28718800-28724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:28721000-28723800	Weak transcription	A549	lung
5	chr6:28721000-28723800	Weak transcription	Hela-S3	cervix
6	chr6:28721800-28723200	Flanking Active TSS	K562	blood
7	chr6:28721800-28724000	Weak transcription	Placenta	Placenta

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