Variant report

Variant	rs9257172
Chromosome Location	chr6:28744305-28744306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10484543	0.81[AMR][1000 genomes]
rs1539584	0.86[AMR][1000 genomes]
rs28381660	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28381661	0.81[AMR][1000 genomes]
rs28381663	0.81[AMR][1000 genomes]
rs28400868	0.81[AMR][1000 genomes]
rs28400869	0.81[AMR][1000 genomes]
rs28743260	0.83[AMR][1000 genomes]
rs6909419	0.80[AMR][1000 genomes]
rs72844382	0.81[AMR][1000 genomes]
rs7763940	0.81[AMR][1000 genomes]
rs7776376	0.81[AMR][1000 genomes]
rs9257117	0.84[ASN][1000 genomes]
rs9257124	0.86[ASN][1000 genomes]
rs9257128	0.86[ASN][1000 genomes]
rs9257129	0.89[ASN][1000 genomes]
rs9257131	0.85[ASN][1000 genomes]
rs9257132	0.89[ASN][1000 genomes]
rs9257148	0.95[ASN][1000 genomes]
rs9257149	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9257150	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9257157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257168	0.96[ASN][1000 genomes]
rs9257175	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257185	0.90[ASN][1000 genomes]
rs9257186	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257270	0.81[AMR][1000 genomes]
rs9348814	0.81[AMR][1000 genomes]
rs9368576	0.81[AMR][1000 genomes]
rs9378107	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9378149	0.81[AMR][1000 genomes]
rs9393932	0.81[AMR][1000 genomes]
rs9393933	0.81[AMR][1000 genomes]
rs9404976	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28740000-28746000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:28740400-28745200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:28740800-28744400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr6:28741000-28745000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr6:28741600-28744400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
6	chr6:28742600-28745200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
7	chr6:28742800-28744400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr6:28743600-28745000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr6:28743600-28745000	Active TSS	H9 Cell Line	embryonic stem cell
10	chr6:28743600-28745000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
11	chr6:28743600-28745200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:28743600-28746000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:28743800-28744600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:28744000-28745400	Flanking Active TSS	K562	blood
15	chr6:28744200-28744400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr6:28744200-28744400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:28744200-28744400	Bivalent Enhancer	Primary hematopoietic stem cells	blood
18	chr6:28744200-28744600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr6:28744200-28744800	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum

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