Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:28739105..28742072-chr6:28746732..28748309,2	K562	blood:
2	chr6:28741705..28743702-chr6:28750039..28751986,2	MCF-7	breast:
3	chr6:28739775..28742884-chr6:28756307..28759477,3	K562	blood:

Variant related genes	Relation type
ENSG00000235559	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12660605	0.80[AMR][1000 genomes]
rs16897420	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3869043	0.81[ASN][1000 genomes]
rs56404349	0.80[AMR][1000 genomes]
rs9257114	0.81[ASN][1000 genomes]
rs9257117	0.84[ASN][1000 genomes]
rs9257124	0.87[ASN][1000 genomes]
rs9257128	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9257129	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9257131	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9257132	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9257148	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9257149	0.95[ASN][1000 genomes]
rs9257150	0.95[ASN][1000 genomes]
rs9257157	0.96[ASN][1000 genomes]
rs9257172	0.96[ASN][1000 genomes]
rs9257175	0.96[ASN][1000 genomes]
rs9257185	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9348812	0.80[AMR][1000 genomes]
rs9380085	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28740000-28746000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr6:28740200-28742000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr6:28740400-28745200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:28740800-28744400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:28741000-28745000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr6:28741200-28743800	Weak transcription	K562	blood
7	chr6:28741400-28742800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:28741400-28743600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:28741600-28742000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
10	chr6:28741600-28742000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr6:28741600-28742000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:28741600-28743000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:28741600-28743000	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:28741600-28744400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
15	chr6:28741800-28742000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell

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