Variant report

Variant	rs9257131
Chromosome Location	chr6:28721495-28721496
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28719866..28722717-chr6:28750909..28752820,2	K562	blood:
2	chr6:28701813..28704465-chr6:28720205..28723280,3	K562	blood:
3	chr6:28695559..28699343-chr6:28721391..28727067,6	K562	blood:
4	chr6:28715243..28717665-chr6:28720660..28723020,3	MCF-7	breast:
5	chr6:27859657..27862433-chr6:28721002..28723229,2	K562	blood:
6	chr6:28685640..28691299-chr6:28719887..28724041,7	K562	blood:
7	chr6:28720936..28723199-chr6:28731913..28733640,2	K562	blood:

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000235559	Chromatin interaction
ENSG00000196331	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12660605	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2394130	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2893970	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2893973	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3869043	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56404349	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257110	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9257111	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9257112	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9257114	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9257115	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9257117	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9257124	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9257128	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9257129	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9257132	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9257148	0.90[ASN][1000 genomes]
rs9257149	0.89[ASN][1000 genomes]
rs9257150	0.89[ASN][1000 genomes]
rs9257157	0.88[ASN][1000 genomes]
rs9257168	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9257172	0.85[ASN][1000 genomes]
rs9257175	0.88[ASN][1000 genomes]
rs9257185	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9348812	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9380085	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9380086	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9393928	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28715400-28725000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:28715600-28724800	Weak transcription	HMEC	breast
3	chr6:28718800-28724600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:28719800-28722400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:28720800-28721800	Active TSS	K562	blood
6	chr6:28721000-28723800	Weak transcription	A549	lung
7	chr6:28721000-28723800	Weak transcription	Hela-S3	cervix
8	chr6:28721400-28721800	Active TSS	Placenta	Placenta

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