Variant report

Variant	rs12660605
Chromosome Location	chr6:28693883-28693884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28692257..28693945-chr6:28757387..28759135,2	K562	blood:
2	chr6:28693617..28695446-chr6:28910054..28912139,2	K562	blood:
3	chr6:28692707..28694832-chr6:28724756..28727492,3	K562	blood:
4	chr6:28691994..28695396-chr6:28761030..28763739,3	K562	blood:
5	chr6:28693274..28695982-chr6:28860211..28863205,2	K562	blood:
6	chr6:26030101..26033875-chr6:28691435..28694341,3	K562	blood:
7	chr6:28649582..28652211-chr6:28693042..28694734,2	K562	blood:
8	chr6:28582658..28585156-chr6:28692576..28695191,2	K562	blood:
9	chr6:28693769..28696400-chr6:28804513..28806706,3	K562	blood:
10	chr6:28693500..28696718-chr6:28743195..28744760,3	K562	blood:
11	chr6:28692512..28694882-chr6:28831386..28833136,2	K562	blood:
12	chr6:28692413..28694711-chr6:28778373..28780345,2	K562	blood:
13	chr6:28693622..28696352-chr6:28828631..28830226,2	K562	blood:
14	chr6:28693863..28696096-chr6:28729329..28732311,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000137259	Chromatin interaction
ENSG00000221191	Chromatin interaction
ENSG00000124693	Chromatin interaction
ENSG00000204709	Chromatin interaction
ENSG00000232040	Chromatin interaction
ENSG00000225595	Chromatin interaction
ENSG00000213916	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1539584	0.91[ASN][1000 genomes]
rs2394130	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2893970	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2893973	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3869043	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56404349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72844382	0.91[ASN][1000 genomes]
rs9257110	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9257111	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9257112	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9257114	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9257115	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9257117	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9257124	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9257128	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9257129	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9257131	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9257132	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9257168	0.80[AMR][1000 genomes]
rs9257185	0.80[AMR][1000 genomes]
rs9348812	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9368571	0.90[ASN][1000 genomes]
rs9380085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9380086	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9393928	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28693200-28694200	Flanking Active TSS	K562	blood
2	chr6:28693600-28696200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:28693800-28694400	Enhancers	A549	lung
4	chr6:28693800-28696200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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