Variant report
| Variant | rs72844382 |
|---|---|
| Chromosome Location | chr6:28680892-28680893 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:28674230..28679862-chr6:28680075..28684685,7 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs12660605 | 0.91[ASN][1000 genomes] |
| rs1539584 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2394130 | 0.89[ASN][1000 genomes] |
| rs2893970 | 0.88[ASN][1000 genomes] |
| rs2893973 | 0.89[ASN][1000 genomes] |
| rs3869043 | 0.88[ASN][1000 genomes] |
| rs56404349 | 0.99[ASN][1000 genomes] |
| rs9257110 | 0.90[ASN][1000 genomes] |
| rs9257111 | 0.90[ASN][1000 genomes] |
| rs9257112 | 0.89[ASN][1000 genomes] |
| rs9257114 | 0.88[ASN][1000 genomes] |
| rs9257115 | 0.86[ASN][1000 genomes] |
| rs9257117 | 0.84[ASN][1000 genomes] |
| rs9257124 | 0.81[ASN][1000 genomes] |
| rs9257129 | 0.82[ASN][1000 genomes] |
| rs9257132 | 0.82[ASN][1000 genomes] |
| rs9257150 | 0.81[AMR][1000 genomes] |
| rs9257157 | 0.81[AMR][1000 genomes] |
| rs9257172 | 0.81[AMR][1000 genomes] |
| rs9257175 | 0.80[AMR][1000 genomes] |
| rs9348812 | 0.99[ASN][1000 genomes] |
| rs9368571 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs9380085 | 0.99[ASN][1000 genomes] |
| rs9380086 | 0.97[ASN][1000 genomes] |
| rs9393928 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534089 | chr6:28636972-28841640 | Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| 2 | esv3449735 | chr6:28679873-28681871 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 3 | esv3403349 | chr6:28680223-28681471 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:28680200-28684400 | Weak transcription | K562 | blood |
