Variant report

Variant	rs9257157
Chromosome Location	chr6:28736484-28736485
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28689073..28690596-chr6:28736279..28738758,2	K562	blood:
2	chr6:28731767..28734753-chr6:28735144..28738101,4	K562	blood:
3	chr6:28734776..28737188-chr6:28758091..28759724,2	K562	blood:
4	chr6:28731785..28733596-chr6:28736349..28738667,2	K562	blood:
5	chr6:28723896..28728359-chr6:28734827..28738855,4	K562	blood:
6	chr6:28723896..28728359-chr6:28734827..28738855,6	K562	blood:
7	chr6:28733571..28736534-chr6:28751232..28752788,2	K562	blood:
8	chr6:28677418..28680355-chr6:28735511..28738375,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235559	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10484543	0.81[AMR][1000 genomes]
rs1539584	0.86[AMR][1000 genomes]
rs2394130	0.82[ASN][1000 genomes]
rs28381660	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28381661	0.81[AMR][1000 genomes]
rs28381663	0.81[AMR][1000 genomes]
rs28400868	0.81[AMR][1000 genomes]
rs28400869	0.81[AMR][1000 genomes]
rs28743260	0.83[AMR][1000 genomes]
rs2893970	0.81[ASN][1000 genomes]
rs2893973	0.81[ASN][1000 genomes]
rs3869043	0.82[ASN][1000 genomes]
rs6909419	0.80[AMR][1000 genomes]
rs72844382	0.81[AMR][1000 genomes]
rs7763940	0.81[AMR][1000 genomes]
rs7776376	0.81[AMR][1000 genomes]
rs9257110	0.81[ASN][1000 genomes]
rs9257111	0.81[ASN][1000 genomes]
rs9257112	0.82[ASN][1000 genomes]
rs9257114	0.82[ASN][1000 genomes]
rs9257117	0.86[ASN][1000 genomes]
rs9257124	0.89[ASN][1000 genomes]
rs9257128	0.89[ASN][1000 genomes]
rs9257129	0.92[ASN][1000 genomes]
rs9257131	0.88[ASN][1000 genomes]
rs9257132	0.92[ASN][1000 genomes]
rs9257148	0.98[ASN][1000 genomes]
rs9257149	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9257150	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9257168	0.96[ASN][1000 genomes]
rs9257172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257175	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9257185	0.93[ASN][1000 genomes]
rs9257186	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9257270	0.81[AMR][1000 genomes]
rs9348814	0.81[AMR][1000 genomes]
rs9368576	0.81[AMR][1000 genomes]
rs9378107	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9378149	0.81[AMR][1000 genomes]
rs9393932	0.81[AMR][1000 genomes]
rs9393933	0.81[AMR][1000 genomes]
rs9404976	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28733600-28740800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:28735400-28737400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chr6:28735400-28738600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:28735600-28737200	Weak transcription	K562	blood
5	chr6:28736200-28737200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
6	chr6:28736200-28737400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr6:28736400-28736600	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
8	chr6:28736400-28736600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell

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