Variant report

Variant	rs9378107
Chromosome Location	chr6:28761683-28761684
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:28691994..28695396-chr6:28761030..28763739,3	K562	blood:
2	chr6:28760359..28762539-chr6:28774291..28776179,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10484543	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28381660	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28381661	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28381663	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs28381666	0.81[AMR][1000 genomes]
rs28400868	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28400869	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28743260	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6909419	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs743847	0.80[AMR][1000 genomes]
rs7763940	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7776376	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9257149	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9257150	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9257157	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9257172	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9257175	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9257186	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9257269	0.84[AMR][1000 genomes]
rs9257270	0.81[AMR][1000 genomes]
rs9257274	0.82[AMR][1000 genomes]
rs9257281	0.81[AMR][1000 genomes]
rs9348814	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9368576	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9378149	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9380090	0.83[AFR][1000 genomes]
rs9393932	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9393933	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9404976	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv3384463	chr6:28759027-28776259	Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28758400-28761800	Weak transcription	HSMMtube	muscle
2	chr6:28758800-28761800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:28758800-28761800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr6:28759400-28761800	Weak transcription	A549	lung
5	chr6:28759600-28763600	Weak transcription	Hela-S3	cervix
6	chr6:28761400-28761800	Enhancers	HepG2	liver
7	chr6:28761400-28761800	Enhancers	K562	blood
8	chr6:28761600-28761800	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:28761600-28762200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:28761600-28762400	Active TSS	HMEC	breast
11	chr6:28761600-28762600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
12	chr6:28761600-28762600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr6:28761600-28762800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr6:28761600-28762800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:28761600-28763000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr6:28761600-28763000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr6:28761600-28763800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:28761600-28764600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell

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