Variant report

Variant	rs9257186
Chromosome Location	chr6:28756483-28756484
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr6:28756458-28758236	K562	blood:	n/a	n/a

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28743433..28746834-chr6:28752955..28757172,5	K562	blood:
2	chr6:28705580..28707892-chr6:28755666..28757274,2	K562	blood:
3	chr6:28739775..28742884-chr6:28756307..28759477,3	K562	blood:
4	chr6:28755863..28758470-chr6:28911484..28913225,2	K562	blood:
5	chr6:28756425..28760621-chr6:28761088..28764506,5	K562	blood:
6	chr6:28746864..28751693-chr6:28754692..28757727,4	K562	blood:
7	chr6:28665488..28667691-chr6:28756212..28758692,2	K562	blood:
8	chr6:28755863..28759570-chr6:28911484..28914475,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000235559	TF binding region
ENSG00000221191	Chromatin interaction
ENSG00000204709	Chromatin interaction
ENSG00000265764	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10484543	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs28381660	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28381661	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28381663	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs28381666	0.81[AMR][1000 genomes]
rs28400868	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28400869	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28743260	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6909419	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs743847	0.80[AMR][1000 genomes]
rs7763940	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7776376	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9257149	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9257150	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9257157	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9257172	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257175	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9257269	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9257270	0.81[AMR][1000 genomes]
rs9257274	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9257281	0.81[AMR][1000 genomes]
rs9348814	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9368576	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9378107	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9378149	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9380090	0.82[AFR][1000 genomes]
rs9393932	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9393933	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9404976	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28755800-28757600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:28756400-28756800	Flanking Active TSS	K562	blood
3	chr6:28756400-28757200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:28756400-28757200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr6:28756400-28758600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:28756400-28759200	Active TSS	A549	lung

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