Variant report

Variant	rs9257185
Chromosome Location	chr6:28756405-28756406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12660605	0.80[AMR][1000 genomes]
rs16897420	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56404349	0.80[AMR][1000 genomes]
rs9257117	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9257124	0.86[ASN][1000 genomes]
rs9257128	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9257129	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9257131	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9257132	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9257148	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9257149	0.92[ASN][1000 genomes]
rs9257150	0.92[ASN][1000 genomes]
rs9257157	0.93[ASN][1000 genomes]
rs9257168	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9257172	0.90[ASN][1000 genomes]
rs9257175	0.93[ASN][1000 genomes]
rs9348812	0.80[AMR][1000 genomes]
rs9380085	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534089	chr6:28636972-28841640	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv883517	chr6:28751727-28802149	Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28755800-28757600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:28756400-28756800	Flanking Active TSS	K562	blood
3	chr6:28756400-28757200	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:28756400-28757200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
5	chr6:28756400-28758600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr6:28756400-28759200	Active TSS	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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