The 2.0 version of rSNPBase

Variant report

Variant rs28408662
Chromosome Location chr15:50640584-50640585
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:88 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:50600800-50641400 Weak transcription HSMM muscle
2 chr15:50600800-50641600 Weak transcription Fetal Kidney kidney
3 chr15:50600800-50643000 Weak transcription Fetal Thymus thymus
4 chr15:50600800-50643400 Weak transcription Fetal Muscle Leg muscle
5 chr15:50600800-50644200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
6 chr15:50600800-50644600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr15:50601400-50642800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
8 chr15:50608800-50642800 Weak transcription Hela-S3 cervix
9 chr15:50611200-50641200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr15:50611400-50641200 Weak transcription Primary T cells from cord blood blood
11 chr15:50614400-50640800 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr15:50615200-50644000 Weak transcription HSMMtube muscle
13 chr15:50618200-50642400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr15:50618400-50646000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
15 chr15:50620400-50641800 Weak transcription Adipose Nuclei Adipose
16 chr15:50621200-50646000 Weak transcription Gastric stomach
17 chr15:50621800-50640800 Weak transcription Fetal Brain Male brain
18 chr15:50622000-50642400 Weak transcription Skeletal Muscle Female skeletal muscle
19 chr15:50622800-50640800 Weak transcription Right Ventricle heart
20 chr15:50623400-50643000 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr15:50623800-50644200 Weak transcription HUES6 Cell Line embryonic stem cell
22 chr15:50623800-50645600 Weak transcription H9 Cell Line embryonic stem cell
23 chr15:50624000-50644000 Weak transcription HUES48 Cell Line embryonic stem cell
24 chr15:50624000-50644000 Weak transcription HUES64 Cell Line embryonic stem cell
25 chr15:50624000-50644000 Weak transcription iPS-20b Cell Line embryonic stem cell
26 chr15:50625600-50641600 Weak transcription Osteobl bone
27 chr15:50626000-50641400 Weak transcription Dnd41 blood
28 chr15:50627400-50641400 Weak transcription Fetal Brain Female brain
29 chr15:50627600-50642400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr15:50627600-50643000 Weak transcription Cortex derived primary cultured neurospheres brain
31 chr15:50627800-50641600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
32 chr15:50627800-50643600 Weak transcription Lung lung
33 chr15:50628200-50641400 Weak transcription Brain Hippocampus Middle brain
34 chr15:50628400-50643600 Weak transcription Fetal Muscle Trunk muscle
35 chr15:50629000-50642800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
36 chr15:50630000-50641600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr15:50630000-50641600 Weak transcription GM12878-XiMat blood
38 chr15:50630000-50643600 Weak transcription Placenta Placenta
39 chr15:50630400-50641600 Weak transcription Muscle Satellite Cultured Cells --
40 chr15:50631000-50641400 Weak transcription Duodenum Smooth Muscle Duodenum
41 chr15:50631000-50643400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
42 chr15:50631400-50643400 Weak transcription Fetal Stomach stomach
43 chr15:50631400-50643800 Weak transcription Fetal Intestine Small intestine
44 chr15:50631600-50642400 Weak transcription Thymus Thymus
45 chr15:50632800-50640800 Weak transcription Primary B cells from peripheral blood blood
46 chr15:50632800-50640800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr15:50632800-50641000 Weak transcription Primary hematopoietic stem cells blood
48 chr15:50632800-50641600 Weak transcription K562 blood
49 chr15:50633000-50640800 Weak transcription Primary B cells from cord blood blood
50 chr15:50633000-50641600 Weak transcription NHLF lung

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Last update: Aug 31, 2015