The 2.0 version of rSNPBase

Variant report

Variant rs28690939
Chromosome Location chr15:50598474-50598475
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:121 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:50568800-50599200 Weak transcription ES-I3 Cell Line embryonic stem cell
2 chr15:50570400-50606600 Weak transcription Brain Cingulate Gyrus brain
3 chr15:50570800-50600600 Weak transcription Spleen Spleen
4 chr15:50574400-50602000 Weak transcription Small Intestine intestine
5 chr15:50575200-50601000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr15:50576600-50599000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr15:50578200-50600400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr15:50580400-50599200 Weak transcription Fetal Brain Male brain
9 chr15:50580400-50605000 Weak transcription Fetal Heart heart
10 chr15:50580800-50600600 Weak transcription Pancreas Pancrea
11 chr15:50580800-50638400 Weak transcription NHEK skin
12 chr15:50581000-50600600 Weak transcription Colonic Mucosa Colon
13 chr15:50585600-50599200 Weak transcription K562 blood
14 chr15:50586600-50599000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
15 chr15:50586800-50598600 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
16 chr15:50586800-50598800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr15:50586800-50598800 Weak transcription iPS-15b Cell Line embryonic stem cell
18 chr15:50587000-50599400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
19 chr15:50587200-50600400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr15:50588200-50599200 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
21 chr15:50589400-50598800 Strong transcription Primary hematopoietic stem cells short term culture blood
22 chr15:50589800-50602600 Weak transcription Gastric stomach
23 chr15:50592400-50600200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
24 chr15:50592400-50600600 Weak transcription Esophagus oesophagus
25 chr15:50592600-50599200 Weak transcription HSMMtube muscle
26 chr15:50592600-50600400 Weak transcription NHLF lung
27 chr15:50593200-50600000 Weak transcription Right Ventricle heart
28 chr15:50593400-50599200 Weak transcription Brain Germinal Matrix brain
29 chr15:50593400-50600600 Weak transcription Psoas Muscle Psoas
30 chr15:50593400-50602400 Weak transcription Placenta Amnion Placenta Amnion
31 chr15:50593600-50598800 Weak transcription Brain Substantia Nigra brain
32 chr15:50593600-50599200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr15:50593600-50599400 Weak transcription Osteobl bone
34 chr15:50593600-50599800 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr15:50593600-50600000 Weak transcription Brain Hippocampus Middle brain
36 chr15:50593600-50600200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
37 chr15:50593600-50600200 Weak transcription Brain Angular Gyrus brain
38 chr15:50593600-50600200 Weak transcription Brain Inferior Temporal Lobe brain
39 chr15:50593600-50600200 Weak transcription Sigmoid Colon Sigmoid Colon
40 chr15:50593600-50600600 Weak transcription Left Ventricle heart
41 chr15:50593600-50600600 Weak transcription Lung lung
42 chr15:50593600-50602400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr15:50593600-50605200 Weak transcription Skeletal Muscle Male skeletal muscle
44 chr15:50593800-50599200 Weak transcription Fetal Kidney kidney
45 chr15:50593800-50599600 Weak transcription Rectal Smooth Muscle rectum
46 chr15:50593800-50600000 Weak transcription Primary neutrophils fromperipheralblood blood
47 chr15:50593800-50600400 Weak transcription Primary T killer naive cells fromperipheralblood blood
48 chr15:50594000-50599000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
49 chr15:50594000-50599000 Weak transcription A549 lung
50 chr15:50594000-50599200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015