Variant report
Variant | rs28437690 |
---|---|
Chromosome Location | chr9:8767276-8767277 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1010430 | 0.91[ASN][1000 genomes] |
rs1010431 | 0.83[ASN][1000 genomes] |
rs1010592 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs10115495 | 0.91[ASN][1000 genomes] |
rs10115534 | 0.87[ASN][1000 genomes] |
rs10116682 | 0.91[ASN][1000 genomes] |
rs10116825 | 0.91[ASN][1000 genomes] |
rs10116862 | 0.91[ASN][1000 genomes] |
rs10116864 | 0.83[ASN][1000 genomes] |
rs10117781 | 0.91[ASN][1000 genomes] |
rs10117784 | 0.91[ASN][1000 genomes] |
rs10119621 | 0.91[ASN][1000 genomes] |
rs10119880 | 0.91[ASN][1000 genomes] |
rs10119977 | 0.91[ASN][1000 genomes] |
rs10120474 | 0.81[AFR][1000 genomes];0.91[ASN][1000 genomes] |
rs10121002 | 0.91[ASN][1000 genomes] |
rs10121660 | 0.91[ASN][1000 genomes] |
rs10121711 | 0.91[ASN][1000 genomes] |
rs10121822 | 0.91[ASN][1000 genomes] |
rs10122791 | 0.91[ASN][1000 genomes] |
rs10123721 | 0.91[ASN][1000 genomes] |
rs10123888 | 0.91[ASN][1000 genomes] |
rs10123942 | 0.87[ASN][1000 genomes] |
rs10124548 | 0.91[ASN][1000 genomes] |
rs10124556 | 0.91[ASN][1000 genomes] |
rs10124623 | 0.91[ASN][1000 genomes] |
rs10125895 | 0.91[ASN][1000 genomes] |
rs10511508 | 0.85[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs10977283 | 0.91[ASN][1000 genomes] |
rs10977284 | 0.91[ASN][1000 genomes] |
rs1125028 | 1.00[ASN][1000 genomes] |
rs12336050 | 0.91[ASN][1000 genomes] |
rs12336986 | 0.91[ASN][1000 genomes] |
rs12337421 | 0.91[ASN][1000 genomes] |
rs12338284 | 0.91[ASN][1000 genomes] |
rs12339313 | 0.91[ASN][1000 genomes] |
rs12340296 | 0.91[ASN][1000 genomes] |
rs12341000 | 0.91[ASN][1000 genomes] |
rs12341036 | 0.91[ASN][1000 genomes] |
rs12341159 | 0.91[ASN][1000 genomes] |
rs12341980 | 0.91[ASN][1000 genomes] |
rs12342012 | 0.87[ASN][1000 genomes] |
rs12343063 | 0.91[ASN][1000 genomes] |
rs12343256 | 1.00[ASN][1000 genomes] |
rs12343509 | 0.91[ASN][1000 genomes] |
rs12344739 | 0.91[ASN][1000 genomes] |
rs12344813 | 0.91[ASN][1000 genomes] |
rs12345759 | 0.91[ASN][1000 genomes] |
rs12345801 | 0.91[ASN][1000 genomes] |
rs12345828 | 0.91[ASN][1000 genomes] |
rs12346008 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs12346124 | 0.91[ASN][1000 genomes] |
rs12348895 | 0.87[ASN][1000 genomes] |
rs12349665 | 0.91[ASN][1000 genomes] |
rs12352815 | 0.91[ASN][1000 genomes] |
rs16928406 | 0.86[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs16928409 | 1.00[ASN][1000 genomes] |
rs16928415 | 1.00[ASN][1000 genomes] |
rs16928416 | 1.00[ASN][1000 genomes] |
rs28499282 | 0.91[ASN][1000 genomes] |
rs28551048 | 0.91[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs28568886 | 0.91[ASN][1000 genomes] |
rs28612646 | 0.91[ASN][1000 genomes] |
rs28651097 | 0.91[ASN][1000 genomes] |
rs56966652 | 1.00[ASN][1000 genomes] |
rs57421642 | 0.92[ASN][1000 genomes] |
rs58000229 | 1.00[ASN][1000 genomes] |
rs58643799 | 1.00[ASN][1000 genomes] |
rs59095682 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs59234375 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs59657024 | 1.00[ASN][1000 genomes] |
rs60445316 | 1.00[ASN][1000 genomes] |
rs60835389 | 1.00[ASN][1000 genomes] |
rs61122451 | 0.91[ASN][1000 genomes] |
rs61353274 | 0.91[ASN][1000 genomes] |
rs6477335 | 0.91[ASN][1000 genomes] |
rs6477336 | 0.91[ASN][1000 genomes] |
rs6477338 | 0.83[ASN][1000 genomes] |
rs6477339 | 0.91[ASN][1000 genomes] |
rs6477340 | 0.91[ASN][1000 genomes] |
rs6477341 | 0.91[ASN][1000 genomes] |
rs6477342 | 0.91[ASN][1000 genomes] |
rs6477343 | 0.91[ASN][1000 genomes] |
rs6477344 | 0.91[ASN][1000 genomes] |
rs6477345 | 0.91[ASN][1000 genomes] |
rs6477346 | 0.91[ASN][1000 genomes] |
rs6477349 | 0.91[ASN][1000 genomes] |
rs6477350 | 0.91[ASN][1000 genomes] |
rs6477351 | 0.91[ASN][1000 genomes] |
rs6477352 | 0.91[ASN][1000 genomes] |
rs6477353 | 0.91[ASN][1000 genomes] |
rs7019648 | 0.91[ASN][1000 genomes] |
rs7020279 | 1.00[ASN][1000 genomes] |
rs7020436 | 1.00[ASN][1000 genomes] |
rs7020654 | 1.00[ASN][1000 genomes] |
rs7021320 | 1.00[ASN][1000 genomes] |
rs7021553 | 0.91[ASN][1000 genomes] |
rs7021929 | 0.91[ASN][1000 genomes] |
rs7022836 | 0.91[ASN][1000 genomes] |
rs7023083 | 0.91[ASN][1000 genomes] |
rs7023805 | 1.00[ASN][1000 genomes] |
rs7023939 | 1.00[ASN][1000 genomes] |
rs7024461 | 1.00[ASN][1000 genomes] |
rs7028203 | 0.88[ASN][1000 genomes] |
rs7028255 | 0.91[ASN][1000 genomes] |
rs7031382 | 0.91[ASN][1000 genomes] |
rs7031558 | 0.91[ASN][1000 genomes] |
rs7031704 | 1.00[ASN][1000 genomes] |
rs7033599 | 0.91[ASN][1000 genomes] |
rs7035241 | 1.00[ASN][1000 genomes] |
rs7035351 | 1.00[ASN][1000 genomes] |
rs7036354 | 1.00[ASN][1000 genomes] |
rs7036968 | 0.91[ASN][1000 genomes] |
rs7038493 | 0.91[ASN][1000 genomes] |
rs7038928 | 0.91[ASN][1000 genomes] |
rs7039040 | 0.91[ASN][1000 genomes] |
rs7039134 | 0.91[ASN][1000 genomes] |
rs7039258 | 0.91[ASN][1000 genomes] |
rs7039274 | 0.91[ASN][1000 genomes] |
rs7040177 | 0.91[ASN][1000 genomes] |
rs7040648 | 0.91[ASN][1000 genomes] |
rs7041986 | 0.91[ASN][1000 genomes] |
rs7046324 | 0.91[ASN][1000 genomes] |
rs7046821 | 0.87[ASN][1000 genomes] |
rs7046939 | 0.91[ASN][1000 genomes] |
rs7047860 | 1.00[ASN][1000 genomes] |
rs7048772 | 0.91[ASN][1000 genomes] |
rs73419256 | 0.91[ASN][1000 genomes] |
rs73419260 | 0.91[ASN][1000 genomes] |
rs73419274 | 0.91[ASN][1000 genomes] |
rs73419275 | 0.91[ASN][1000 genomes] |
rs73419285 | 0.91[ASN][1000 genomes] |
rs73419288 | 0.91[ASN][1000 genomes] |
rs73421204 | 0.91[ASN][1000 genomes] |
rs73421207 | 0.91[ASN][1000 genomes] |
rs73421220 | 0.91[ASN][1000 genomes] |
rs73421222 | 0.91[ASN][1000 genomes] |
rs73421232 | 0.91[ASN][1000 genomes] |
rs73421251 | 0.91[ASN][1000 genomes] |
rs73421288 | 0.91[ASN][1000 genomes] |
rs73421289 | 0.83[ASN][1000 genomes] |
rs73421296 | 0.91[ASN][1000 genomes] |
rs73421301 | 0.91[ASN][1000 genomes] |
rs73423004 | 0.87[ASN][1000 genomes] |
rs73423005 | 0.91[ASN][1000 genomes] |
rs73423009 | 0.91[ASN][1000 genomes] |
rs73423012 | 0.91[ASN][1000 genomes] |
rs73423013 | 0.91[ASN][1000 genomes] |
rs73423020 | 0.91[ASN][1000 genomes] |
rs73423091 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs73423093 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs73423094 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs73425010 | 1.00[ASN][1000 genomes] |
rs73425028 | 0.88[ASN][1000 genomes] |
rs73425031 | 0.91[ASN][1000 genomes] |
rs73425033 | 0.91[ASN][1000 genomes] |
rs73425037 | 0.91[ASN][1000 genomes] |
rs73425100 | 0.91[ASN][1000 genomes] |
rs73427015 | 0.80[AFR][1000 genomes];0.91[ASN][1000 genomes] |
rs73431628 | 0.91[ASN][1000 genomes] |
rs7847019 | 1.00[ASN][1000 genomes] |
rs7851535 | 0.91[ASN][1000 genomes] |
rs7851825 | 0.91[ASN][1000 genomes] |
rs7852417 | 0.91[ASN][1000 genomes] |
rs7856854 | 0.91[ASN][1000 genomes] |
rs7856996 | 0.91[ASN][1000 genomes] |
rs7857860 | 0.91[ASN][1000 genomes] |
rs7858621 | 1.00[ASN][1000 genomes] |
rs7858753 | 0.91[ASN][1000 genomes] |
rs7859115 | 1.00[ASN][1000 genomes] |
rs7861796 | 0.91[ASN][1000 genomes] |
rs7861848 | 0.91[ASN][1000 genomes] |
rs7861953 | 0.91[ASN][1000 genomes] |
rs7862046 | 0.91[ASN][1000 genomes] |
rs7862573 | 0.87[ASN][1000 genomes] |
rs7862892 | 0.91[ASN][1000 genomes] |
rs7863481 | 0.91[ASN][1000 genomes] |
rs7865769 | 0.91[ASN][1000 genomes] |
rs7867098 | 0.91[ASN][1000 genomes] |
rs7869843 | 0.91[ASN][1000 genomes] |
rs7870548 | 0.91[ASN][1000 genomes] |
rs7871611 | 0.91[ASN][1000 genomes] |
rs7872872 | 1.00[ASN][1000 genomes] |
rs7873114 | 1.00[ASN][1000 genomes] |
rs7873146 | 0.80[AFR][1000 genomes];1.00[ASN][1000 genomes] |
rs7873178 | 0.91[ASN][1000 genomes] |
rs7873999 | 0.91[ASN][1000 genomes] |
rs7874851 | 1.00[ASN][1000 genomes] |
rs7875869 | 1.00[ASN][1000 genomes] |
rs892498 | 0.91[ASN][1000 genomes] |
rs892499 | 0.91[ASN][1000 genomes] |
rs9299071 | 0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1022796 | chr9:8360729-9110046 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
2 | nsv892235 | chr9:8700396-8865925 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
3 | nsv1025800 | chr9:8712487-9030627 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
4 | nsv539980 | chr9:8712487-9030627 | Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
5 | nsv892236 | chr9:8745520-8870553 | Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | nsv892237 | chr9:8752743-8794314 | Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv1015898 | chr9:8753534-9011443 | Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
8 | nsv892238 | chr9:8757828-8794314 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | TF binding region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:8752200-8776600 | Weak transcription | Fetal Muscle Trunk | muscle |
2 | chr9:8752800-8769400 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
3 | chr9:8758600-8773200 | Weak transcription | Brain Inferior Temporal Lobe | brain |
4 | chr9:8760800-8769200 | Weak transcription | Brain Anterior Caudate | brain |
5 | chr9:8761600-8777600 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
6 | chr9:8762000-8769400 | Weak transcription | Brain Substantia Nigra | brain |
7 | chr9:8762600-8779000 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
8 | chr9:8762800-8778600 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
9 | chr9:8763000-8769200 | Weak transcription | Brain Angular Gyrus | brain |
10 | chr9:8763200-8769000 | Weak transcription | Ovary | ovary |
11 | chr9:8763200-8778000 | Weak transcription | HUES64 Cell Line | embryonic stem cell |
12 | chr9:8763200-8780600 | Weak transcription | Fetal Kidney | kidney |
13 | chr9:8763800-8770000 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
14 | chr9:8764800-8783600 | Weak transcription | Fetal Stomach | stomach |
15 | chr9:8765400-8768800 | Weak transcription | Brain Hippocampus Middle | brain |
16 | chr9:8765800-8768400 | Weak transcription | Fetal Lung | lung |