Variant report

Variant	rs58643799
Chromosome Location	chr9:8770037-8770038
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 200 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:192)

rs_ID	r²[population]
rs1010430	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1010431	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1010592	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10115495	0.91[ASN][1000 genomes]
rs10115534	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10116682	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10116825	0.91[ASN][1000 genomes]
rs10116862	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10116864	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10117781	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10117784	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10119621	0.91[ASN][1000 genomes]
rs10119880	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10119977	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10120474	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10121002	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10121660	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10121711	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10121822	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10122791	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10123721	0.91[ASN][1000 genomes]
rs10123888	0.91[ASN][1000 genomes]
rs10123942	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10124548	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10124556	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10124623	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10125895	0.91[ASN][1000 genomes]
rs10511508	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10977283	0.91[ASN][1000 genomes]
rs10977284	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1125028	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336050	0.91[ASN][1000 genomes]
rs12336986	0.91[ASN][1000 genomes]
rs12337421	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12338284	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12339313	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12340296	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12341000	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12341036	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12341159	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12341980	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12342012	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12343063	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12343256	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343509	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12344739	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12344813	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12345759	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12345801	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12345828	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12346008	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346124	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12348895	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12349665	0.91[ASN][1000 genomes]
rs12352815	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16928406	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928409	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28437690	1.00[ASN][1000 genomes]
rs28499282	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28551048	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28568886	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28612646	0.91[ASN][1000 genomes]
rs28651097	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56966652	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57421642	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58000229	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59095682	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59234375	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59657024	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60445316	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60835389	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61122451	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61353274	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6477335	0.91[ASN][1000 genomes]
rs6477336	0.91[ASN][1000 genomes]
rs6477338	0.83[ASN][1000 genomes]
rs6477339	0.91[ASN][1000 genomes]
rs6477340	0.91[ASN][1000 genomes]
rs6477341	0.91[ASN][1000 genomes]
rs6477342	0.91[ASN][1000 genomes]
rs6477343	0.91[ASN][1000 genomes]
rs6477344	0.91[ASN][1000 genomes]
rs6477345	0.91[ASN][1000 genomes]
rs6477346	0.91[ASN][1000 genomes]
rs6477349	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6477350	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6477351	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6477352	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6477353	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7019648	0.91[ASN][1000 genomes]
rs7020279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020436	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021320	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021553	0.91[ASN][1000 genomes]
rs7021929	0.91[ASN][1000 genomes]
rs7022836	0.91[ASN][1000 genomes]
rs7023083	0.91[ASN][1000 genomes]
rs7023805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023939	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7024461	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7028203	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7028255	0.91[ASN][1000 genomes]
rs7031382	0.91[ASN][1000 genomes]
rs7031558	0.91[ASN][1000 genomes]
rs7031704	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033599	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7035241	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035351	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036354	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036968	0.91[ASN][1000 genomes]
rs7038493	0.91[ASN][1000 genomes]
rs7038928	0.91[ASN][1000 genomes]
rs7039040	0.91[ASN][1000 genomes]
rs7039134	0.91[ASN][1000 genomes]
rs7039258	0.91[ASN][1000 genomes]
rs7039274	0.91[ASN][1000 genomes]
rs7040177	0.91[ASN][1000 genomes]
rs7040648	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7041986	0.91[ASN][1000 genomes]
rs7046324	0.91[ASN][1000 genomes]
rs7046821	0.87[ASN][1000 genomes]
rs7046939	0.91[ASN][1000 genomes]
rs7047860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048772	0.91[ASN][1000 genomes]
rs73419256	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73419260	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73419274	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73419275	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73419285	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73419288	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421204	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421207	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421220	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421222	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421232	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421251	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421288	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421289	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73421296	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421301	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73423004	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73423005	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73423009	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73423012	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73423013	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73423020	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73423091	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423093	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423094	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425028	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73425031	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73425033	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73425037	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73425100	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73427015	0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs73431628	0.91[ASN][1000 genomes]
rs7847019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851535	0.91[ASN][1000 genomes]
rs7851825	0.91[ASN][1000 genomes]
rs7852417	0.91[ASN][1000 genomes]
rs7856854	0.91[ASN][1000 genomes]
rs7856996	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7857860	0.91[ASN][1000 genomes]
rs7858621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858753	0.91[ASN][1000 genomes]
rs7859115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861796	0.91[ASN][1000 genomes]
rs7861848	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7861953	0.91[ASN][1000 genomes]
rs7862046	0.91[ASN][1000 genomes]
rs7862573	0.87[ASN][1000 genomes]
rs7862892	0.91[ASN][1000 genomes]
rs7863481	0.91[ASN][1000 genomes]
rs7865769	0.91[ASN][1000 genomes]
rs7867098	0.91[ASN][1000 genomes]
rs7869843	0.91[ASN][1000 genomes]
rs7870548	0.91[ASN][1000 genomes]
rs7871611	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7872872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873146	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873178	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7873999	0.91[ASN][1000 genomes]
rs7874851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7875869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892498	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs892499	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9299071	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv892237	chr9:8752743-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv892238	chr9:8757828-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8752200-8776600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:8758600-8773200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:8761600-8777600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr9:8762600-8779000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:8762800-8778600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:8763200-8778000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:8763200-8780600	Weak transcription	Fetal Kidney	kidney
8	chr9:8764800-8783600	Weak transcription	Fetal Stomach	stomach
9	chr9:8767600-8778400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:8768800-8770200	Enhancers	Brain Hippocampus Middle	brain
11	chr9:8769200-8770200	Enhancers	Brain Anterior Caudate	brain
12	chr9:8769200-8770600	Weak transcription	Ovary	ovary
13	chr9:8769400-8770200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr9:8769400-8770200	Enhancers	Brain Substantia Nigra	brain
15	chr9:8769600-8773000	Weak transcription	Brain Angular Gyrus	brain
16	chr9:8769600-8779600	Weak transcription	Fetal Lung	lung
17	chr9:8769800-8773000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr9:8770000-8770200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

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