Variant report

Variant	rs73423020
Chromosome Location	chr9:8762986-8762987
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 202 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:194)

rs_ID	r²[population]
rs1010430	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1010431	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1010592	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10115495	1.00[ASN][1000 genomes]
rs10115534	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10116682	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116825	1.00[ASN][1000 genomes]
rs10116862	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116864	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10117781	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117784	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119621	1.00[ASN][1000 genomes]
rs10119880	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119977	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120474	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121002	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121660	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121711	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121822	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122791	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123721	1.00[ASN][1000 genomes]
rs10123888	1.00[ASN][1000 genomes]
rs10123942	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10124548	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124556	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124623	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125895	1.00[ASN][1000 genomes]
rs10511508	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10977283	1.00[ASN][1000 genomes]
rs10977284	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1125028	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12336050	1.00[ASN][1000 genomes]
rs12336986	1.00[ASN][1000 genomes]
rs12337421	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338284	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339313	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340296	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341000	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341036	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341159	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341980	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342012	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12343063	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343256	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12343509	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344739	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344813	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345759	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345801	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345828	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346008	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12346124	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348895	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12349665	1.00[ASN][1000 genomes]
rs12352815	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928406	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16928409	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16928415	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16928416	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28437690	0.91[ASN][1000 genomes]
rs28499282	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28551048	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28568886	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28612646	1.00[ASN][1000 genomes]
rs28651097	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56966652	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57421642	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58000229	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58643799	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59095682	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59234375	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59657024	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60445316	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60835389	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61122451	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61353274	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477335	1.00[ASN][1000 genomes]
rs6477336	1.00[ASN][1000 genomes]
rs6477338	0.91[ASN][1000 genomes]
rs6477339	1.00[ASN][1000 genomes]
rs6477340	1.00[ASN][1000 genomes]
rs6477341	1.00[ASN][1000 genomes]
rs6477342	1.00[ASN][1000 genomes]
rs6477343	1.00[ASN][1000 genomes]
rs6477344	1.00[ASN][1000 genomes]
rs6477345	1.00[ASN][1000 genomes]
rs6477346	1.00[ASN][1000 genomes]
rs6477349	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477350	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477351	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477352	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477353	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019648	1.00[ASN][1000 genomes]
rs7020279	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7020436	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7020654	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7021320	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7021553	1.00[ASN][1000 genomes]
rs7021929	1.00[ASN][1000 genomes]
rs7022836	1.00[ASN][1000 genomes]
rs7023083	1.00[ASN][1000 genomes]
rs7023805	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7023939	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7024461	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7028203	1.00[EUR][1000 genomes]
rs7028255	1.00[ASN][1000 genomes]
rs7031382	1.00[ASN][1000 genomes]
rs7031558	1.00[ASN][1000 genomes]
rs7031704	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7033599	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035241	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7035350	0.86[ASN][1000 genomes]
rs7035351	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7035352	0.86[ASN][1000 genomes]
rs7036354	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7036968	1.00[ASN][1000 genomes]
rs7038493	1.00[ASN][1000 genomes]
rs7038928	1.00[ASN][1000 genomes]
rs7039040	1.00[ASN][1000 genomes]
rs7039134	1.00[ASN][1000 genomes]
rs7039258	1.00[ASN][1000 genomes]
rs7039274	1.00[ASN][1000 genomes]
rs7040177	1.00[ASN][1000 genomes]
rs7040648	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041986	1.00[ASN][1000 genomes]
rs7046324	1.00[ASN][1000 genomes]
rs7046821	0.95[ASN][1000 genomes]
rs7046939	1.00[ASN][1000 genomes]
rs7047860	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7048772	1.00[ASN][1000 genomes]
rs73419256	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419260	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419274	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419275	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419285	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419288	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421204	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421207	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421220	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421222	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421232	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421251	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421288	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421289	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421296	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421301	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423004	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73423005	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423009	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423012	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423013	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423091	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73423093	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73423094	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73425010	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73425028	1.00[EUR][1000 genomes]
rs73425031	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73425033	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73425037	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73425100	0.83[ASN][1000 genomes]
rs73427015	0.83[ASN][1000 genomes]
rs73431628	1.00[ASN][1000 genomes]
rs7847019	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7851535	1.00[ASN][1000 genomes]
rs7851825	1.00[ASN][1000 genomes]
rs7852417	1.00[ASN][1000 genomes]
rs7856854	1.00[ASN][1000 genomes]
rs7856996	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857860	1.00[ASN][1000 genomes]
rs7858621	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7858753	1.00[ASN][1000 genomes]
rs7859115	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7861796	1.00[ASN][1000 genomes]
rs7861848	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861953	1.00[ASN][1000 genomes]
rs7862046	1.00[ASN][1000 genomes]
rs7862573	0.95[ASN][1000 genomes]
rs7862892	1.00[ASN][1000 genomes]
rs7863481	1.00[ASN][1000 genomes]
rs7865769	1.00[ASN][1000 genomes]
rs7867098	1.00[ASN][1000 genomes]
rs7869843	1.00[ASN][1000 genomes]
rs7870548	1.00[ASN][1000 genomes]
rs7871611	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872872	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7873114	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7873146	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7873178	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873999	1.00[ASN][1000 genomes]
rs7874851	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7875869	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs892498	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892499	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299071	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv892237	chr9:8752743-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases
7	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv892238	chr9:8757828-8794314	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8751200-8764400	Weak transcription	Fetal Stomach	stomach
2	chr9:8752200-8776600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:8752800-8769400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:8758200-8764000	Weak transcription	Fetal Brain Male	brain
5	chr9:8758400-8763000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:8758600-8773200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:8760800-8763000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr9:8760800-8767000	Weak transcription	Fetal Heart	heart
9	chr9:8760800-8769200	Weak transcription	Brain Anterior Caudate	brain
10	chr9:8761000-8763200	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr9:8761600-8777600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:8761800-8764200	Weak transcription	Fetal Brain Female	brain
13	chr9:8762000-8763000	Weak transcription	Brain Hippocampus Middle	brain
14	chr9:8762000-8764000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:8762000-8769400	Weak transcription	Brain Substantia Nigra	brain
16	chr9:8762400-8763000	Enhancers	Brain Angular Gyrus	brain
17	chr9:8762600-8763200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:8762600-8763200	Enhancers	Fetal Kidney	kidney
19	chr9:8762600-8779000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:8762800-8763000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr9:8762800-8763000	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr9:8762800-8763200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr9:8762800-8763200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr9:8762800-8778600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links