Variant report

Variant	rs6477341
Chromosome Location	chr9:8746774-8746775
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 201 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs1010430	1.00[ASN][1000 genomes]
rs1010431	0.91[ASN][1000 genomes]
rs1010592	0.91[ASN][1000 genomes]
rs10115495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10115534	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10116682	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116825	1.00[ASN][1000 genomes]
rs10116862	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116864	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10117781	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10117784	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119880	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119977	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120474	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121002	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121660	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121711	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10121822	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10122645	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs10122791	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123721	1.00[ASN][1000 genomes]
rs10123888	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123942	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10124548	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124556	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124623	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10125895	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511508	0.91[ASN][1000 genomes]
rs10977283	1.00[ASN][1000 genomes]
rs10977284	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1125028	0.91[ASN][1000 genomes]
rs12336050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336986	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337421	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338284	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12339313	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12340296	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341000	1.00[ASN][1000 genomes]
rs12341036	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341159	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341980	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342012	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12343063	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343256	0.91[ASN][1000 genomes]
rs12343509	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344739	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344813	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345759	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345801	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345828	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12346008	0.91[ASN][1000 genomes]
rs12346124	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348895	0.95[ASN][1000 genomes]
rs12349665	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352815	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928406	0.91[ASN][1000 genomes]
rs16928409	0.91[ASN][1000 genomes]
rs16928415	0.91[ASN][1000 genomes]
rs16928416	0.91[ASN][1000 genomes]
rs28437690	0.91[ASN][1000 genomes]
rs28499282	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28551048	0.91[ASN][1000 genomes]
rs28568886	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28612646	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28651097	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56966652	0.91[ASN][1000 genomes]
rs57421642	0.84[ASN][1000 genomes]
rs58000229	0.91[ASN][1000 genomes]
rs58643799	0.91[ASN][1000 genomes]
rs59095682	0.91[ASN][1000 genomes]
rs59234375	0.91[ASN][1000 genomes]
rs59657024	0.91[ASN][1000 genomes]
rs60445316	0.91[ASN][1000 genomes]
rs60835389	0.91[ASN][1000 genomes]
rs61122451	0.83[ASN][1000 genomes]
rs61353274	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477335	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477336	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477338	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6477339	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477340	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477345	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477346	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477349	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477350	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477351	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477352	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477353	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7019648	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020279	0.91[ASN][1000 genomes]
rs7020436	0.91[ASN][1000 genomes]
rs7020654	0.91[ASN][1000 genomes]
rs7021320	0.91[ASN][1000 genomes]
rs7021553	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021929	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022836	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023083	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023805	0.91[ASN][1000 genomes]
rs7023939	0.91[ASN][1000 genomes]
rs7024461	0.91[ASN][1000 genomes]
rs7028255	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031382	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031558	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031704	0.91[ASN][1000 genomes]
rs7033599	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7035241	0.91[ASN][1000 genomes]
rs7035350	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7035351	0.91[ASN][1000 genomes]
rs7035352	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7036354	0.91[ASN][1000 genomes]
rs7036968	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038928	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039040	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039134	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039258	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039274	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040177	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040648	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7041986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046324	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046821	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7046939	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7047860	0.91[ASN][1000 genomes]
rs7048772	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419256	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419260	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419274	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419275	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419285	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419288	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421204	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421207	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421220	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421222	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421232	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421251	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421288	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421289	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73421296	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73421301	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423004	0.95[ASN][1000 genomes]
rs73423005	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423009	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423012	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423013	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423020	1.00[ASN][1000 genomes]
rs73423091	0.91[ASN][1000 genomes]
rs73423093	0.91[ASN][1000 genomes]
rs73423094	0.91[ASN][1000 genomes]
rs73425010	0.91[ASN][1000 genomes]
rs73425031	0.83[ASN][1000 genomes]
rs73425033	0.83[ASN][1000 genomes]
rs73425037	0.83[ASN][1000 genomes]
rs73425100	0.83[ASN][1000 genomes]
rs73427015	0.83[ASN][1000 genomes]
rs73431628	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7847019	0.91[ASN][1000 genomes]
rs7851535	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851825	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852417	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856854	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856996	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857860	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858621	0.91[ASN][1000 genomes]
rs7858753	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859115	0.91[ASN][1000 genomes]
rs7861796	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861848	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861953	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862046	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862573	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7862892	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863481	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7865769	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867098	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870548	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871611	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7872326	0.91[AMR][1000 genomes]
rs7872444	0.91[AMR][1000 genomes]
rs7872872	0.91[ASN][1000 genomes]
rs7873114	0.91[ASN][1000 genomes]
rs7873146	0.91[ASN][1000 genomes]
rs7873178	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7873999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874851	0.91[ASN][1000 genomes]
rs7875869	0.91[ASN][1000 genomes]
rs892498	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892499	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9299071	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6474	chr9:8706602-8751414	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv892236	chr9:8745520-8870553	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8735600-8750600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:8737200-8750400	Weak transcription	Fetal Heart	heart
3	chr9:8737600-8750600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:8739400-8747400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:8743600-8750400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:8743600-8750400	Weak transcription	Brain Substantia Nigra	brain
7	chr9:8745400-8750600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr9:8746000-8750600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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