Variant report

Variant	rs7865769
Chromosome Location	chr9:8739407-8739408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 202 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:197)

rs_ID	r²[population]
rs1010430	1.00[ASN][1000 genomes]
rs1010431	0.91[ASN][1000 genomes]
rs1010592	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[ASN][1000 genomes]
rs10115495	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10115534	0.95[ASN][1000 genomes]
rs10116682	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10116825	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10116862	1.00[ASN][1000 genomes]
rs10116864	0.91[ASN][1000 genomes]
rs10117781	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs10117784	1.00[ASN][1000 genomes]
rs10119621	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119880	1.00[ASN][1000 genomes]
rs10119977	1.00[ASN][1000 genomes]
rs10120474	1.00[ASN][1000 genomes]
rs10121002	1.00[ASN][1000 genomes]
rs10121660	1.00[ASN][1000 genomes]
rs10121711	1.00[ASN][1000 genomes]
rs10121822	1.00[ASN][1000 genomes]
rs10122645	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10122791	1.00[ASN][1000 genomes]
rs10123721	1.00[ASN][1000 genomes]
rs10123888	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123942	0.95[ASN][1000 genomes]
rs10124548	1.00[ASN][1000 genomes]
rs10124556	1.00[ASN][1000 genomes]
rs10124623	1.00[ASN][1000 genomes]
rs10125895	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10511508	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10977283	1.00[ASN][1000 genomes]
rs10977284	1.00[ASN][1000 genomes]
rs1125028	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12336050	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336986	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337421	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12338284	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12339313	1.00[ASN][1000 genomes]
rs12340296	1.00[ASN][1000 genomes]
rs12341000	1.00[ASN][1000 genomes]
rs12341036	1.00[ASN][1000 genomes]
rs12341159	1.00[ASN][1000 genomes]
rs12341980	1.00[ASN][1000 genomes]
rs12342012	0.95[ASN][1000 genomes]
rs12343063	1.00[ASN][1000 genomes]
rs12343256	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs12343509	1.00[ASN][1000 genomes]
rs12344739	1.00[ASN][1000 genomes]
rs12344813	1.00[ASN][1000 genomes]
rs12345759	1.00[ASN][1000 genomes]
rs12345801	1.00[ASN][1000 genomes]
rs12345828	1.00[ASN][1000 genomes]
rs12346008	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[ASN][1000 genomes]
rs12346124	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12348895	0.95[ASN][1000 genomes]
rs12349665	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352815	1.00[ASN][1000 genomes]
rs16928406	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16928409	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16928415	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[ASN][1000 genomes]
rs16928416	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs28437690	0.91[ASN][1000 genomes]
rs28499282	1.00[ASN][1000 genomes]
rs28551048	0.91[ASN][1000 genomes]
rs28568886	1.00[ASN][1000 genomes]
rs28612646	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28651097	1.00[ASN][1000 genomes]
rs56966652	0.91[ASN][1000 genomes]
rs57421642	0.84[ASN][1000 genomes]
rs58000229	0.91[ASN][1000 genomes]
rs58643799	0.91[ASN][1000 genomes]
rs59095682	0.91[ASN][1000 genomes]
rs59234375	0.91[ASN][1000 genomes]
rs59657024	0.91[ASN][1000 genomes]
rs60445316	0.91[ASN][1000 genomes]
rs60835389	0.91[ASN][1000 genomes]
rs61122451	0.83[ASN][1000 genomes]
rs61353274	1.00[ASN][1000 genomes]
rs6477335	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477336	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477338	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6477339	1.00[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477340	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477341	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477342	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477343	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477344	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477345	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477346	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6477349	1.00[ASN][1000 genomes]
rs6477350	1.00[ASN][1000 genomes]
rs6477351	1.00[ASN][1000 genomes]
rs6477352	1.00[ASN][1000 genomes]
rs6477353	1.00[ASN][1000 genomes]
rs7019648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020279	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7020436	0.91[ASN][1000 genomes]
rs7020654	0.91[ASN][1000 genomes]
rs7021319	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7021320	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[ASN][1000 genomes]
rs7021553	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021929	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7022836	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023083	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023805	0.91[ASN][1000 genomes]
rs7023939	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7024461	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7028203	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs7028255	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7031704	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7033599	1.00[ASN][1000 genomes]
rs7035241	0.91[ASN][1000 genomes]
rs7035350	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7035351	0.91[ASN][1000 genomes]
rs7035352	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7036354	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[ASN][1000 genomes]
rs7036968	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038493	0.85[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7038928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039040	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039134	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039258	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039274	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040177	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7040648	1.00[ASN][1000 genomes]
rs7041986	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046821	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7046939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7047860	0.91[ASN][1000 genomes]
rs7048772	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73419256	1.00[ASN][1000 genomes]
rs73419260	1.00[ASN][1000 genomes]
rs73419274	1.00[ASN][1000 genomes]
rs73419275	1.00[ASN][1000 genomes]
rs73419285	1.00[ASN][1000 genomes]
rs73419288	1.00[ASN][1000 genomes]
rs73421204	1.00[ASN][1000 genomes]
rs73421207	1.00[ASN][1000 genomes]
rs73421220	1.00[ASN][1000 genomes]
rs73421222	1.00[ASN][1000 genomes]
rs73421232	1.00[ASN][1000 genomes]
rs73421251	1.00[ASN][1000 genomes]
rs73421288	1.00[ASN][1000 genomes]
rs73421289	0.91[ASN][1000 genomes]
rs73421296	1.00[ASN][1000 genomes]
rs73421301	1.00[ASN][1000 genomes]
rs73423004	0.95[ASN][1000 genomes]
rs73423005	1.00[ASN][1000 genomes]
rs73423009	1.00[ASN][1000 genomes]
rs73423012	1.00[ASN][1000 genomes]
rs73423013	1.00[ASN][1000 genomes]
rs73423020	1.00[ASN][1000 genomes]
rs73423091	0.91[ASN][1000 genomes]
rs73423093	0.91[ASN][1000 genomes]
rs73423094	0.91[ASN][1000 genomes]
rs73425010	0.91[ASN][1000 genomes]
rs73425031	0.83[ASN][1000 genomes]
rs73425033	0.83[ASN][1000 genomes]
rs73425037	0.83[ASN][1000 genomes]
rs73425100	0.83[ASN][1000 genomes]
rs73427015	0.83[ASN][1000 genomes]
rs73431628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7847019	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7851535	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851825	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7852417	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856854	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856996	1.00[ASN][1000 genomes]
rs7857860	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858621	0.91[ASN][1000 genomes]
rs7858753	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7859115	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7861796	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861848	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs7861953	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862046	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7862573	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7862892	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7863481	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867098	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7869843	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7870548	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7871611	1.00[ASN][1000 genomes]
rs7872326	1.00[AMR][1000 genomes]
rs7872444	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7872872	0.91[ASN][1000 genomes]
rs7873114	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7873146	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7873178	1.00[ASN][1000 genomes]
rs7873999	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874851	0.91[ASN][1000 genomes]
rs7875869	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs892498	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs892499	1.00[ASN][1000 genomes]
rs9299071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv892235	chr9:8700396-8865925	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv6474	chr9:8706602-8751414	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8722000-8744600	Weak transcription	Dnd41	blood
2	chr9:8734200-8743400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:8735600-8750600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:8737200-8741000	Weak transcription	Brain Angular Gyrus	brain
5	chr9:8737200-8742800	Weak transcription	Fetal Brain Male	brain
6	chr9:8737200-8750400	Weak transcription	Fetal Heart	heart
7	chr9:8737600-8750600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr9:8738400-8740000	Enhancers	Brain Substantia Nigra	brain
9	chr9:8738800-8739600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:8738800-8739600	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr9:8738800-8739600	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr9:8738800-8739800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:8739200-8740200	Weak transcription	Brain Cingulate Gyrus	brain
14	chr9:8739200-8743200	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:8739400-8739600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:8739400-8741400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:8739400-8747400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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