The 2.0 version of rSNPBase

Variant report

Variant rs28451719
Chromosome Location chr5:43425500-43425501
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:27 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43419000-43432600 Weak transcription Colonic Mucosa Colon
2 chr5:43420600-43430200 Weak transcription Gastric stomach
3 chr5:43422000-43425800 Weak transcription Duodenum Smooth Muscle Duodenum
4 chr5:43422000-43432600 Weak transcription Pancreas Pancrea
5 chr5:43422400-43425800 Weak transcription HSMM muscle
6 chr5:43422600-43425600 Weak transcription Osteobl bone
7 chr5:43422600-43425800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr5:43422600-43425800 Weak transcription Muscle Satellite Cultured Cells --
9 chr5:43422800-43425600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
10 chr5:43422800-43425600 Weak transcription A549 lung
11 chr5:43422800-43425800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr5:43422800-43425800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr5:43422800-43425800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr5:43422800-43425800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr5:43422800-43425800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:43422800-43428400 Weak transcription Duodenum Mucosa Duodenum
17 chr5:43422800-43432800 Weak transcription NH-A brain
18 chr5:43423000-43425600 Weak transcription Stomach Mucosa stomach
19 chr5:43423000-43425800 Weak transcription NHEK skin
20 chr5:43423000-43428200 Weak transcription Liver Liver
21 chr5:43423200-43425800 Weak transcription HMEC breast
22 chr5:43423600-43425600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr5:43423600-43426200 Weak transcription HepG2 liver
24 chr5:43425000-43426400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr5:43425400-43426800 Enhancers HSMMtube muscle
26 chr5:43425400-43427400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr5:43425400-43427800 Enhancers Hela-S3 cervix

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Last update: Aug 31, 2015