Variant report

Variant	rs16873315
Chromosome Location	chr5:43417315-43417316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr5:43416680-43417361	T-47D	breast:	n/a	chr5:43416994-43417011 chr5:43416993-43417010
2	ESR1	chr5:43416776-43417388	T-47D	breast:	n/a	chr5:43416994-43417011 chr5:43416993-43417010
3	ESR1	chr5:43416746-43417438	T-47D	breast:	n/a	chr5:43416994-43417011 chr5:43416993-43417010
4	ESR1	chr5:43416687-43417432	T-47D	breast:	n/a	chr5:43416994-43417011 chr5:43416993-43417010
5	ESR1	chr5:43416788-43417340	ECC-1	luminal epithelium:	n/a	chr5:43416994-43417011 chr5:43416993-43417010

No.	Distal block	Cell Line	Cell type
1	chr5:43414938..43417802-chr5:43484116..43485960,3	K562	blood:
2	chr5:43414418..43419410-chr5:43420621..43423728,9	MCF-7	breast:
3	chr5:43415058..43417712-chr5:43429941..43433858,3	MCF-7	breast:
4	chr5:43416364..43419275-chr5:43427305..43429059,2	MCF-7	breast:
5	chr5:43415947..43418426-chr5:43483212..43485985,2	MCF-7	breast:
6	chr5:43124778..43127199-chr5:43415095..43418069,2	K562	blood:
7	chr5:43416042..43417802-chr5:43484116..43485960,3	K562	blood:
8	chr5:43414209..43417437-chr5:43419319..43422239,3	K562	blood:
9	chr5:43411569..43413529-chr5:43414948..43417316,2	MCF-7	breast:

Variant related genes	Relation type
CCL28	TF binding region
ENSG00000249492	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000151882	Chromatin interaction

rs_ID	r²[population]
rs10044743	1.00[ASN][1000 genomes]
rs10054311	1.00[ASN][1000 genomes]
rs10066349	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10067571	1.00[ASN][1000 genomes]
rs10069318	0.87[AFR][1000 genomes]
rs10071090	1.00[ASN][1000 genomes]
rs10074298	1.00[ASN][1000 genomes]
rs10085107	1.00[ASN][1000 genomes]
rs10473314	1.00[ASN][1000 genomes]
rs13155023	1.00[ASN][1000 genomes]
rs13165339	1.00[ASN][1000 genomes]
rs13167052	1.00[ASN][1000 genomes]
rs13357169	1.00[ASN][1000 genomes]
rs16873319	0.84[AFR][1000 genomes]
rs28368979	1.00[ASN][1000 genomes]
rs28412681	1.00[ASN][1000 genomes]
rs28451719	1.00[ASN][1000 genomes]
rs28502686	1.00[ASN][1000 genomes]
rs28710329	1.00[ASN][1000 genomes]
rs34150414	1.00[ASN][1000 genomes]
rs34388270	0.87[AFR][1000 genomes]
rs34497448	1.00[ASN][1000 genomes]
rs34574158	1.00[ASN][1000 genomes]
rs34685576	0.84[AFR][1000 genomes]
rs35350677	1.00[ASN][1000 genomes]
rs35748848	1.00[ASN][1000 genomes]
rs35756093	1.00[ASN][1000 genomes]
rs35929451	0.92[AFR][1000 genomes]
rs36036217	1.00[ASN][1000 genomes]
rs36097388	1.00[ASN][1000 genomes]
rs4264950	0.92[AFR][1000 genomes]
rs4438885	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4498257	0.87[AFR][1000 genomes]
rs4529199	0.89[AFR][1000 genomes]
rs4554231	0.93[AFR][1000 genomes]
rs4616901	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56729517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58107242	1.00[ASN][1000 genomes]
rs58142433	1.00[ASN][1000 genomes]
rs58622160	1.00[ASN][1000 genomes]
rs6451691	0.84[AMR][1000 genomes]
rs6862604	0.87[EUR][1000 genomes]
rs6886399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6889653	0.88[AFR][1000 genomes]
rs6897604	1.00[ASN][1000 genomes]
rs71627599	1.00[ASN][1000 genomes]
rs71629106	1.00[ASN][1000 genomes]
rs73751088	1.00[ASN][1000 genomes]
rs73751089	1.00[ASN][1000 genomes]
rs73751704	1.00[ASN][1000 genomes]
rs73751705	1.00[ASN][1000 genomes]
rs73751745	1.00[ASN][1000 genomes]
rs73751749	1.00[ASN][1000 genomes]
rs73754741	1.00[ASN][1000 genomes]
rs73754743	1.00[ASN][1000 genomes]
rs7720858	0.92[AFR][1000 genomes]
rs7731345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7732460	1.00[ASN][1000 genomes]
rs7736174	0.92[AFR][1000 genomes]
rs9292885	1.00[ASN][1000 genomes]

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43402200-43420200	Weak transcription	Gastric	stomach
2	chr5:43411200-43418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:43412600-43420400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:43412600-43421600	Weak transcription	Pancreas	Pancrea
5	chr5:43415800-43417400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:43416400-43417400	Enhancers	Stomach Mucosa	stomach
7	chr5:43416600-43417600	Enhancers	Small Intestine	intestine
8	chr5:43416600-43417600	Enhancers	K562	blood
9	chr5:43417200-43418600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:43417200-43420200	Weak transcription	HepG2	liver
11	chr5:43417200-43421600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:43417200-43421800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr5:43417200-43421800	Weak transcription	Hela-S3	cervix

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