Variant report

Variant	rs4438885
Chromosome Location	chr5:43421090-43421091
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:43121943..43123711-chr5:43420551..43422374,2	MCF-7	breast:
2	chr5:43414209..43417437-chr5:43419319..43422239,3	K562	blood:
3	chr5:43420922..43425218-chr5:43425765..43430067,4	MCF-7	breast:
4	chr5:43409599..43413283-chr5:43419907..43422419,3	K562	blood:
5	chr5:43421006..43424016-chr5:43430085..43432621,4	MCF-7	breast:
6	chr5:43414418..43419410-chr5:43420621..43423728,9	MCF-7	breast:
7	chr5:43420341..43428921-chr5:43480819..43486060,17	MCF-7	breast:
8	chr5:43420789..43422517-chr5:43480138..43481780,2	K562	blood:
9	chr5:43421016..43422893-chr5:43468500..43470011,2	MCF-7	breast:
10	chr5:43421017..43424119-chr5:43432639..43434257,5	MCF-7	breast:
11	chr5:43420821..43424326-chr5:43480907..43485286,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151881	Chromatin interaction
ENSG00000151882	Chromatin interaction
ENSG00000172262	Chromatin interaction
ENSG00000249492	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10066349	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069318	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1025299	1.00[JPT][hapmap]
rs10461740	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10461741	1.00[JPT][hapmap]
rs10941642	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs12656248	0.98[ASN][1000 genomes]
rs12656650	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12657635	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12657724	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12659627	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13154319	1.00[CEU][hapmap]
rs13155622	1.00[CEU][hapmap]
rs13155888	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13159247	1.00[ASN][1000 genomes]
rs13160431	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13165869	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13167785	1.00[ASN][1000 genomes]
rs13167838	1.00[CEU][hapmap]
rs13167974	1.00[ASN][1000 genomes]
rs13168053	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13169908	1.00[CEU][hapmap]
rs13173517	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13177107	1.00[JPT][hapmap]
rs13180902	1.00[CEU][hapmap]
rs13186439	1.00[CEU][hapmap]
rs13190188	1.00[ASN][1000 genomes]
rs16873315	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs16873319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2042950	1.00[JPT][hapmap]
rs34057521	1.00[ASN][1000 genomes]
rs34087297	0.98[ASN][1000 genomes]
rs34181466	1.00[ASN][1000 genomes]
rs34353246	0.93[ASN][1000 genomes]
rs34388270	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34685576	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141306	1.00[ASN][1000 genomes]
rs35929451	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733767	1.00[JPT][hapmap]
rs3756417	1.00[JPT][hapmap]
rs3792917	1.00[JPT][hapmap]
rs3806871	1.00[CEU][hapmap]
rs3822423	1.00[JPT][hapmap]
rs4264950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498257	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4529199	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4533897	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4554231	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4616901	0.87[AFR][1000 genomes]
rs56729517	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6862588	1.00[JPT][hapmap]
rs6867927	0.80[YRI][hapmap]
rs6886399	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6889653	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6890108	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6890419	0.85[YRI][hapmap]
rs6892337	1.00[JPT][hapmap]
rs6896527	0.85[YRI][hapmap]
rs71629168	1.00[ASN][1000 genomes]
rs71629169	0.98[ASN][1000 genomes]
rs7713529	0.98[ASN][1000 genomes]
rs7720858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731345	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7736173	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736174	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7737947	1.00[JPT][hapmap]
rs9292877	1.00[JPT][hapmap]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43412600-43421600	Weak transcription	Pancreas	Pancrea
2	chr5:43417200-43421600	Weak transcription	Fetal Intestine Small	intestine
3	chr5:43417200-43421800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr5:43417200-43421800	Weak transcription	Hela-S3	cervix
5	chr5:43417600-43421600	Weak transcription	Small Intestine	intestine
6	chr5:43419000-43432600	Weak transcription	Colonic Mucosa	Colon
7	chr5:43419200-43421400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:43419400-43421600	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:43420200-43421400	Weak transcription	Stomach Mucosa	stomach
10	chr5:43420400-43421600	Weak transcription	Fetal Kidney	kidney
11	chr5:43420600-43421600	Weak transcription	NH-A	brain
12	chr5:43420600-43421800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:43420600-43421800	Weak transcription	HepG2	liver
14	chr5:43420600-43430200	Weak transcription	Gastric	stomach
15	chr5:43420800-43421200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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