Variant report

Variant	rs12657724
Chromosome Location	chr5:43429375-43429376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43420922..43425218-chr5:43425765..43430067,4	MCF-7	breast:
2	chr5:43429044..43431597-chr5:43483560..43485398,2	K562	blood:
3	chr5:43424455..43437851-chr5:43481449..43486495,21	MCF-7	breast:
4	chr5:43425564..43427749-chr5:43427854..43431267,3	MCF-7	breast:
5	chr5:43065664..43067789-chr5:43427695..43430360,2	MCF-7	breast:
6	chr5:43401279..43403730-chr5:43426630..43430276,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000172262	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000177738	Chromatin interaction
ENSG00000151881	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10058080	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1025299	1.00[JPT][hapmap]
rs10461740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10461741	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10462050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10941642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12653472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12657635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12658205	1.00[AMR][1000 genomes]
rs12659627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13154319	1.00[CEU][hapmap]
rs13155622	1.00[CEU][hapmap]
rs13155888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13158442	1.00[AMR][1000 genomes]
rs13160431	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13161149	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13161668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13161770	1.00[AMR][1000 genomes]
rs13165869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13167838	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs13168053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13169908	1.00[CEU][hapmap]
rs13173517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13177107	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13179680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13180902	1.00[CEU][hapmap]
rs13183407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13183746	0.91[ASN][1000 genomes]
rs13186439	1.00[CEU][hapmap]
rs13188884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13190614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13356232	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs16873319	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16873404	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2042950	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34096155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34179982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34211578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34350522	1.00[AMR][1000 genomes]
rs34455365	1.00[AMR][1000 genomes]
rs34512505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34617389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34788563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34792822	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34868623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34973456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34980504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34991197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35136550	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35171369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35478855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35590922	1.00[AMR][1000 genomes]
rs35602154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35707409	1.00[AMR][1000 genomes]
rs35713376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35733458	1.00[AMR][1000 genomes]
rs35923573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35966682	1.00[AMR][1000 genomes]
rs36076336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36104847	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3733767	1.00[JPT][hapmap]
rs3756417	1.00[JPT][hapmap]
rs3792917	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs3806871	1.00[CEU][hapmap]
rs3822423	1.00[JPT][hapmap]
rs4264950	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4438885	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4498257	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4533897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6451719	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6862588	1.00[JPT][hapmap]
rs6889653	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6890108	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6892337	1.00[JPT][hapmap]
rs71629170	1.00[AMR][1000 genomes]
rs71629171	1.00[AMR][1000 genomes]
rs71629172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71629174	1.00[AMR][1000 genomes]
rs71629175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71629177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71629178	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71629180	1.00[AMR][1000 genomes]
rs7720858	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7737947	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9292877	1.00[JPT][hapmap]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43419000-43432600	Weak transcription	Colonic Mucosa	Colon
2	chr5:43420600-43430200	Weak transcription	Gastric	stomach
3	chr5:43422000-43432600	Weak transcription	Pancreas	Pancrea
4	chr5:43422800-43432800	Weak transcription	NH-A	brain
5	chr5:43425600-43430400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:43425800-43430400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:43425800-43430400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:43425800-43430400	Enhancers	HMEC	breast
9	chr5:43425800-43430400	Enhancers	NHEK	skin
10	chr5:43426400-43443600	Weak transcription	Esophagus	oesophagus
11	chr5:43426800-43430200	Weak transcription	Stomach Mucosa	stomach
12	chr5:43427000-43432800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:43427600-43429400	Enhancers	Placenta	Placenta
14	chr5:43427800-43429400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:43428000-43429400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:43428200-43429400	Enhancers	Liver	Liver
17	chr5:43428400-43429400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr5:43428600-43429400	Enhancers	H9 Cell Line	embryonic stem cell
19	chr5:43428600-43429400	Enhancers	A549	lung
20	chr5:43428600-43430000	Enhancers	HepG2	liver
21	chr5:43428600-43431400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:43428800-43430400	Enhancers	Hela-S3	cervix
23	chr5:43428800-43432200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:43428800-43432200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:43428800-43432400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr5:43428800-43432400	Weak transcription	Fetal Lung	lung
27	chr5:43428800-43432400	Weak transcription	Osteobl	bone
28	chr5:43428800-43432600	Weak transcription	NHLF	lung
29	chr5:43429200-43429400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr5:43429200-43430400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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