Variant report

Variant	rs13169908
Chromosome Location	chr5:43348509-43348510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC114947.1.1-5	chr5:43348431-43348774	NONHSAT101309

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1025299	0.85[CHB][hapmap]
rs10461740	1.00[CEU][hapmap]
rs10941618	1.00[AMR][1000 genomes]
rs10941642	1.00[CEU][hapmap]
rs12656650	1.00[CEU][hapmap]
rs12657635	1.00[CEU][hapmap]
rs12657724	1.00[CEU][hapmap]
rs12659627	1.00[CEU][hapmap]
rs13154319	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs13155023	1.00[AMR][1000 genomes]
rs13155622	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs13155888	1.00[CEU][hapmap]
rs13160431	1.00[CEU][hapmap]
rs13165339	1.00[AMR][1000 genomes]
rs13165869	1.00[CEU][hapmap]
rs13167052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13167838	1.00[CEU][hapmap]
rs13168053	1.00[CEU][hapmap]
rs13168456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13173517	1.00[CEU][hapmap]
rs13174298	1.00[AMR][1000 genomes]
rs13176917	1.00[EUR][1000 genomes]
rs13180902	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13186439	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16873319	1.00[CEU][hapmap]
rs34150414	1.00[AMR][1000 genomes]
rs34238140	1.00[AMR][1000 genomes]
rs34379498	1.00[AMR][1000 genomes]
rs34497448	1.00[AMR][1000 genomes]
rs34709217	1.00[AMR][1000 genomes]
rs34762186	1.00[AMR][1000 genomes]
rs34880892	1.00[AMR][1000 genomes]
rs34937112	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34965256	1.00[AMR][1000 genomes]
rs35033162	1.00[AMR][1000 genomes]
rs35142013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35350677	1.00[AMR][1000 genomes]
rs35748848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35756093	1.00[AMR][1000 genomes]
rs36036217	1.00[AMR][1000 genomes]
rs36062172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36097388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3733767	0.85[CHB][hapmap]
rs3797152	1.00[AMR][1000 genomes]
rs3806871	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AMR][1000 genomes]
rs3822423	0.85[CHB][hapmap]
rs4264950	1.00[CEU][hapmap]
rs4438885	1.00[CEU][hapmap]
rs4498257	1.00[CEU][hapmap]
rs4533897	1.00[CEU][hapmap]
rs6889653	1.00[CEU][hapmap]
rs6890108	1.00[CEU][hapmap]
rs71590642	1.00[AMR][1000 genomes]
rs71627597	1.00[AMR][1000 genomes]
rs71627598	1.00[AMR][1000 genomes]
rs71627599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71627600	1.00[AMR][1000 genomes]
rs71629104	1.00[EUR][1000 genomes]
rs71629106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7720858	1.00[CEU][hapmap]
rs9292877	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43347200-43349400	Enhancers	HepG2	liver
2	chr5:43347200-43349800	Enhancers	Fetal Intestine Large	intestine
3	chr5:43347600-43349800	Enhancers	Fetal Intestine Small	intestine
4	chr5:43348200-43348600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:43348400-43348600	Enhancers	Esophagus	oesophagus

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