Variant report

Variant	rs35142013
Chromosome Location	chr5:43353529-43353530
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43353310..43356039-chr5:43483039..43485689,2	K562	blood:
2	chr5:43313084..43315493-chr5:43350846..43353946,3	MCF-7	breast:
3	chr5:43311926..43313537-chr5:43352159..43354596,2	MCF-7	breast:
4	chr5:43352697..43356285-chr5:43368873..43371600,3	K562	blood:

Variant related genes	Relation type
ENSG00000112972	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000151881	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10941618	1.00[AMR][1000 genomes]
rs13154319	1.00[AMR][1000 genomes]
rs13155023	1.00[AMR][1000 genomes]
rs13155622	1.00[AMR][1000 genomes]
rs13165339	1.00[AMR][1000 genomes]
rs13167052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13168456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13174298	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13176917	1.00[EUR][1000 genomes]
rs13180902	1.00[EUR][1000 genomes]
rs13186439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34150414	1.00[AMR][1000 genomes]
rs34238140	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34379498	1.00[AMR][1000 genomes]
rs34497448	1.00[AMR][1000 genomes]
rs34709217	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34762186	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34880892	1.00[AMR][1000 genomes]
rs34937112	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34965256	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs35033162	1.00[AMR][1000 genomes]
rs35350677	1.00[AMR][1000 genomes]
rs35748848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35756093	1.00[AMR][1000 genomes]
rs36036217	1.00[AMR][1000 genomes]
rs36062172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs36097388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3797152	1.00[AMR][1000 genomes]
rs3806871	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71590642	1.00[AMR][1000 genomes]
rs71627597	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71627598	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71627599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71627600	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs71629104	1.00[EUR][1000 genomes]
rs71629106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43350400-43354800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:43351200-43357200	Weak transcription	Esophagus	oesophagus
3	chr5:43351600-43356800	Weak transcription	Fetal Intestine Large	intestine
4	chr5:43351600-43356800	Weak transcription	Fetal Intestine Small	intestine
5	chr5:43352800-43354400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links