Variant report

Variant	rs34937112
Chromosome Location	chr5:43341488-43341489
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13167052	1.00[EUR][1000 genomes]
rs13168456	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13169908	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13174298	0.89[ASN][1000 genomes]
rs13176917	1.00[EUR][1000 genomes]
rs13180902	1.00[EUR][1000 genomes]
rs13186439	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2290994	0.83[ASN][1000 genomes]
rs34238140	0.89[ASN][1000 genomes]
rs34709217	0.89[ASN][1000 genomes]
rs34762186	0.89[ASN][1000 genomes]
rs34965256	0.89[ASN][1000 genomes]
rs35142013	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35748848	1.00[EUR][1000 genomes]
rs36062172	1.00[EUR][1000 genomes]
rs36097388	1.00[EUR][1000 genomes]
rs3806871	0.89[ASN][1000 genomes]
rs71627597	0.89[ASN][1000 genomes]
rs71627598	0.89[ASN][1000 genomes]
rs71627599	1.00[EUR][1000 genomes]
rs71627600	0.89[ASN][1000 genomes]
rs71629104	1.00[EUR][1000 genomes]
rs71629106	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
2	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
3	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43340800-43341600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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