Variant report

Variant	rs36062172
Chromosome Location	chr5:43360257-43360258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10043868	0.91[ASN][1000 genomes]
rs10044795	0.85[ASN][1000 genomes]
rs10044799	0.91[ASN][1000 genomes]
rs10062256	0.91[ASN][1000 genomes]
rs1025299	0.91[ASN][1000 genomes]
rs10473309	0.88[ASN][1000 genomes]
rs1083833	0.85[ASN][1000 genomes]
rs10941618	1.00[AMR][1000 genomes]
rs13154319	1.00[AMR][1000 genomes]
rs13155023	1.00[AMR][1000 genomes]
rs13155622	1.00[AMR][1000 genomes]
rs13164705	0.91[ASN][1000 genomes]
rs13165339	1.00[AMR][1000 genomes]
rs13167052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13168456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13169908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13174298	1.00[AMR][1000 genomes]
rs13176917	1.00[EUR][1000 genomes]
rs13180902	1.00[EUR][1000 genomes]
rs13186439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28461402	0.91[ASN][1000 genomes]
rs34060183	0.91[ASN][1000 genomes]
rs34150414	1.00[AMR][1000 genomes]
rs34238140	1.00[AMR][1000 genomes]
rs34379498	1.00[AMR][1000 genomes]
rs34497448	1.00[AMR][1000 genomes]
rs34709217	1.00[AMR][1000 genomes]
rs34762186	1.00[AMR][1000 genomes]
rs34880892	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs34937112	1.00[EUR][1000 genomes]
rs34965256	1.00[AMR][1000 genomes]
rs35001439	0.94[ASN][1000 genomes]
rs35033162	1.00[AMR][1000 genomes]
rs35142013	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35350677	1.00[AMR][1000 genomes]
rs35446538	0.94[ASN][1000 genomes]
rs35748848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35756093	1.00[AMR][1000 genomes]
rs36000604	0.83[ASN][1000 genomes]
rs36025143	0.91[ASN][1000 genomes]
rs36036217	1.00[AMR][1000 genomes]
rs36063200	0.91[ASN][1000 genomes]
rs36097388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3733767	0.91[ASN][1000 genomes]
rs3797152	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs3797153	0.91[ASN][1000 genomes]
rs3806871	1.00[AMR][1000 genomes]
rs3822423	0.91[ASN][1000 genomes]
rs6451687	0.91[ASN][1000 genomes]
rs6451688	0.91[ASN][1000 genomes]
rs6861429	0.91[ASN][1000 genomes]
rs6862588	0.91[ASN][1000 genomes]
rs6865915	0.88[ASN][1000 genomes]
rs6866007	0.85[ASN][1000 genomes]
rs6878207	0.82[ASN][1000 genomes]
rs6892337	0.91[ASN][1000 genomes]
rs71590642	1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs71610306	0.88[ASN][1000 genomes]
rs71627597	1.00[AMR][1000 genomes]
rs71627598	1.00[AMR][1000 genomes]
rs71627599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71627600	1.00[AMR][1000 genomes]
rs71629104	1.00[EUR][1000 genomes]
rs71629106	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71629107	0.91[ASN][1000 genomes]
rs9292877	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43360000-43361400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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