The 2.0 version of rSNPBase

Variant report

Variant rs71629107
Chromosome Location chr5:43387059-43387060
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:48 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:43368600-43389800 Weak transcription Stomach Mucosa stomach
2 chr5:43368800-43396400 Weak transcription Primary hematopoietic stem cells short term culture blood
3 chr5:43370000-43396200 Weak transcription Primary B cells from cord blood blood
4 chr5:43371800-43396800 Weak transcription Small Intestine intestine
5 chr5:43372200-43396800 Weak transcription Gastric stomach
6 chr5:43373200-43396400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
7 chr5:43374600-43396400 Weak transcription Adipose Nuclei Adipose
8 chr5:43375000-43396800 Weak transcription Spleen Spleen
9 chr5:43375400-43387200 Weak transcription Thymus Thymus
10 chr5:43376200-43389800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr5:43377200-43396800 Weak transcription Colonic Mucosa Colon
12 chr5:43378600-43396200 Weak transcription Primary T killer naive cells fromperipheralblood blood
13 chr5:43378800-43396400 Weak transcription Stomach Smooth Muscle stomach
14 chr5:43379000-43396400 Weak transcription Primary T killer memory cells from peripheral blood blood
15 chr5:43379200-43395800 Weak transcription Placenta Placenta
16 chr5:43379400-43388600 Strong transcription Primary T helper cells fromperipheralblood blood
17 chr5:43380400-43396400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
18 chr5:43382200-43396400 Weak transcription Primary hematopoietic stem cells blood
19 chr5:43382600-43387200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
20 chr5:43384800-43387200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
21 chr5:43384800-43388800 Strong transcription Primary T regulatory cells fromperipheralblood blood
22 chr5:43385400-43388400 Strong transcription Primary Natural Killer cells fromperipheralblood blood
23 chr5:43386000-43388600 Strong transcription Primary B cells from peripheral blood blood
24 chr5:43386000-43388600 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
25 chr5:43386000-43389000 Strong transcription Rectal Mucosa Donor 29 rectum
26 chr5:43386000-43396800 Weak transcription Esophagus oesophagus
27 chr5:43386200-43388600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr5:43386200-43389200 Strong transcription Rectal Mucosa Donor 31 rectum
29 chr5:43386400-43387600 Enhancers NHEK skin
30 chr5:43386400-43388400 Enhancers GM12878-XiMat blood
31 chr5:43386400-43388600 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr5:43386400-43389000 Strong transcription Primary T helper cells PMA-I stimulated --
33 chr5:43386400-43389200 Strong transcription Primary T cells from cord blood blood
34 chr5:43386600-43387400 Weak transcription Sigmoid Colon Sigmoid Colon
35 chr5:43386600-43389000 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
36 chr5:43386800-43387600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
37 chr5:43386800-43387600 Enhancers A549 lung
38 chr5:43386800-43387600 Enhancers HMEC breast
39 chr5:43386800-43388600 Strong transcription Primary T cells fromperipheralblood blood
40 chr5:43387000-43387600 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr5:43387000-43387600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
42 chr5:43387000-43387800 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
43 chr5:43387000-43387800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
44 chr5:43387000-43388000 Strong transcription Primary mononuclear cells fromperipheralblood Blood
45 chr5:43387000-43388000 Strong transcription Lung lung
46 chr5:43387000-43388400 Strong transcription Primary T helper naive cells fromperipheralblood blood
47 chr5:43387000-43388600 Strong transcription Primary T helper naive cells from peripheral blood blood
48 chr5:43387000-43389000 Strong transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015