Variant report

Variant	rs6451687
Chromosome Location	chr5:43399639-43399640
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43399583..43400925-chr5:43469975..43470821,5	MCF-7	breast:
2	chr5:43395776..43403836-chr5:43482661..43487155,15	MCF-7	breast:
3	chr5:43398637..43404143-chr5:43481703..43486799,11	MCF-7	breast:
4	chr5:43398812..43401433-chr5:43555742..43558269,2	MCF-7	breast:
5	chr5:43064153..43066269-chr5:43399362..43401705,2	K562	blood:
6	chr5:43399020..43399827-chr5:43484480..43485221,2	MCF-7	breast:
7	chr5:43119611..43121796-chr5:43398070..43400646,2	K562	blood:

Variant related genes	Relation type
ENSG00000249492	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000172262	Chromatin interaction
ENSG00000172239	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10043868	1.00[ASN][1000 genomes]
rs10044795	0.94[ASN][1000 genomes]
rs10044799	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10055041	0.81[ASN][1000 genomes]
rs10062256	1.00[ASN][1000 genomes]
rs1025299	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10473309	0.97[ASN][1000 genomes]
rs1083833	0.94[ASN][1000 genomes]
rs13164705	1.00[ASN][1000 genomes]
rs28461402	1.00[ASN][1000 genomes]
rs34060183	1.00[ASN][1000 genomes]
rs34880892	0.97[ASN][1000 genomes]
rs35001439	0.97[ASN][1000 genomes]
rs35446538	0.97[ASN][1000 genomes]
rs36000604	0.91[ASN][1000 genomes]
rs36025143	1.00[ASN][1000 genomes]
rs36062172	0.91[ASN][1000 genomes]
rs36063200	1.00[ASN][1000 genomes]
rs3733767	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756417	0.83[ASN][1000 genomes]
rs3797152	1.00[ASN][1000 genomes]
rs3797153	1.00[ASN][1000 genomes]
rs3822423	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6451688	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6861429	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6862588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6865915	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6866007	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6868939	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6878207	0.91[ASN][1000 genomes]
rs6892337	1.00[ASN][1000 genomes]
rs71590642	1.00[ASN][1000 genomes]
rs71610306	0.97[ASN][1000 genomes]
rs71629107	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9292877	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43397000-43404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:43397400-43402000	Weak transcription	Gastric	stomach
3	chr5:43397400-43402800	Weak transcription	Stomach Mucosa	stomach
4	chr5:43397400-43410200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:43397600-43401200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:43397600-43402000	Weak transcription	Pancreas	Pancrea
7	chr5:43397600-43402000	Weak transcription	A549	lung
8	chr5:43397600-43409400	Weak transcription	Colonic Mucosa	Colon
9	chr5:43398000-43409000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:43398000-43409400	Weak transcription	Rectal Mucosa Donor 29	rectum

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