Variant report
Variant | rs13180902 |
---|---|
Chromosome Location | chr5:43347280-43347281 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10044743 | 1.00[CHB][hapmap] |
rs10461740 | 1.00[CEU][hapmap] |
rs10941642 | 1.00[CEU][hapmap] |
rs12656650 | 1.00[CEU][hapmap] |
rs12657635 | 1.00[CEU][hapmap] |
rs12657724 | 1.00[CEU][hapmap] |
rs12659627 | 1.00[CEU][hapmap] |
rs13154319 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
rs13155023 | 1.00[CHB][hapmap] |
rs13155622 | 1.00[CEU][hapmap] |
rs13155888 | 1.00[CEU][hapmap] |
rs13160133 | 1.00[CHB][hapmap] |
rs13160431 | 1.00[CEU][hapmap] |
rs13165869 | 1.00[CEU][hapmap] |
rs13167052 | 1.00[EUR][1000 genomes] |
rs13167838 | 1.00[CEU][hapmap] |
rs13168053 | 1.00[CEU][hapmap] |
rs13168456 | 1.00[EUR][1000 genomes] |
rs13169195 | 1.00[CHB][hapmap] |
rs13169908 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs13173517 | 1.00[CEU][hapmap] |
rs13176917 | 1.00[EUR][1000 genomes] |
rs13186439 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
rs16873319 | 1.00[CEU][hapmap] |
rs17303482 | 1.00[CHB][hapmap] |
rs34574158 | 1.00[AMR][1000 genomes] |
rs34937112 | 1.00[EUR][1000 genomes] |
rs35142013 | 1.00[EUR][1000 genomes] |
rs35748848 | 1.00[EUR][1000 genomes] |
rs36062172 | 1.00[EUR][1000 genomes] |
rs36097388 | 1.00[EUR][1000 genomes] |
rs3806871 | 1.00[CEU][hapmap] |
rs4264950 | 1.00[CEU][hapmap] |
rs4438885 | 1.00[CEU][hapmap] |
rs4498257 | 1.00[CEU][hapmap] |
rs4533897 | 1.00[CEU][hapmap] |
rs6889653 | 1.00[CEU][hapmap] |
rs6890108 | 1.00[CEU][hapmap] |
rs71627599 | 1.00[EUR][1000 genomes] |
rs71629104 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71629106 | 1.00[EUR][1000 genomes] |
rs7720858 | 1.00[CEU][hapmap] |
rs7732460 | 1.00[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1023741 | chr5:42768215-43348145 | Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 309 gene(s) | inside rSNPs | diseases |
2 | nsv537737 | chr5:42768215-43348145 | Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 309 gene(s) | inside rSNPs | diseases |
3 | nsv508352 | chr5:43237830-43391062 | Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:43347200-43349400 | Enhancers | HepG2 | liver |
2 | chr5:43347200-43349800 | Enhancers | Fetal Intestine Large | intestine |