Variant report

Variant	rs12657635
Chromosome Location	chr5:43437910-43437911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43435581..43438769-chr5:43481595..43484354,3	K562	blood:
2	chr5:43311687..43314075-chr5:43436636..43439465,2	K562	blood:
3	chr5:43435811..43438769-chr5:43481595..43484330,2	K562	blood:
4	chr5:43400098..43400620-chr5:43437302..43438020,2	MCF-7	breast:
5	chr5:43431403..43434085-chr5:43437708..43439507,2	K562	blood:

Variant related genes	Relation type
ENSG00000249492	Chromatin interaction
ENSG00000112972	Chromatin interaction
ENSG00000151881	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10058080	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1025299	1.00[JPT][hapmap]
rs10461740	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461741	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10462050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10941642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12653472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12653645	0.81[ASN][1000 genomes]
rs12656199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656650	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12657724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12658205	1.00[AMR][1000 genomes]
rs12659627	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154319	1.00[CEU][hapmap]
rs13155622	1.00[CEU][hapmap]
rs13155888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158442	1.00[AMR][1000 genomes]
rs13160431	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13161149	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs13161298	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs13161668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13161770	1.00[AMR][1000 genomes]
rs13165869	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166593	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs13167838	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs13168053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169908	1.00[CEU][hapmap]
rs13173517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13177107	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13179680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13180902	1.00[CEU][hapmap]
rs13183407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13183746	0.93[ASN][1000 genomes]
rs13186439	1.00[CEU][hapmap]
rs13188640	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13188683	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs13188884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13190614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356232	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs16873319	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs16873404	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16873421	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2042950	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34096155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34141186	0.81[ASN][1000 genomes]
rs34179982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34211578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34350522	1.00[AMR][1000 genomes]
rs34455365	1.00[AMR][1000 genomes]
rs34512505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34617389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34788563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34792822	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34868623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34973456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34980504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34991197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35136550	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35171369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35478855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35590922	1.00[AMR][1000 genomes]
rs35602154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35707409	1.00[AMR][1000 genomes]
rs35713376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35733458	1.00[AMR][1000 genomes]
rs35923573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35966682	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs36076336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36104847	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3733767	1.00[JPT][hapmap]
rs3756417	1.00[JPT][hapmap]
rs3792917	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs3806871	1.00[CEU][hapmap]
rs3822423	1.00[JPT][hapmap]
rs4264950	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4438885	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4498257	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4533897	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6451719	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6862588	1.00[JPT][hapmap]
rs6868763	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6889653	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6890108	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs6892337	1.00[JPT][hapmap]
rs71629170	1.00[AMR][1000 genomes]
rs71629171	1.00[AMR][1000 genomes]
rs71629172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71629174	1.00[AMR][1000 genomes]
rs71629175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71629177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71629178	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs71629180	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7720858	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7737947	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs9292877	1.00[JPT][hapmap]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43426400-43443600	Weak transcription	Esophagus	oesophagus
2	chr5:43429400-43460200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:43433200-43454400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr5:43433200-43460200	Weak transcription	NHLF	lung
5	chr5:43433400-43443600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:43433400-43456000	Weak transcription	Brain Hippocampus Middle	brain
7	chr5:43433600-43443000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:43433600-43443400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:43433600-43452200	Weak transcription	Osteobl	bone
10	chr5:43433800-43483400	Weak transcription	Gastric	stomach
11	chr5:43436200-43443600	Weak transcription	Fetal Lung	lung
12	chr5:43436800-43443600	Weak transcription	Thymus	Thymus
13	chr5:43437200-43438400	Enhancers	HepG2	liver
14	chr5:43437200-43438800	Enhancers	Liver	Liver

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