Variant report

Variant	rs35171369
Chromosome Location	chr5:43432068-43432069
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:43431210..43434471-chr5:43482730..43486834,6	MCF-7	breast:
2	chr5:43312546..43314992-chr5:43430991..43434496,4	MCF-7	breast:
3	chr5:43431725..43434320-chr5:43436226..43437819,2	MCF-7	breast:
4	chr5:43395606..43397205-chr5:43429947..43432661,2	MCF-7	breast:
5	chr5:43421006..43424016-chr5:43430085..43432621,4	MCF-7	breast:
6	chr5:43424455..43437851-chr5:43481449..43486495,21	MCF-7	breast:
7	chr5:43431753..43434368-chr5:43450834..43452573,2	MCF-7	breast:
8	chr5:43431403..43434085-chr5:43437708..43439507,2	K562	blood:
9	chr5:43415058..43417712-chr5:43429941..43433858,3	MCF-7	breast:
10	chr5:43425434..43428168-chr5:43429895..43432918,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000151881	Chromatin interaction
ENSG00000112972	Chromatin interaction
ENSG00000249492	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10461740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10462050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10941642	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12653472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12656650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12657635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12657724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12658205	1.00[AMR][1000 genomes]
rs12659627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13155888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13158442	1.00[AMR][1000 genomes]
rs13161668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13161770	1.00[AMR][1000 genomes]
rs13165869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13167838	1.00[AMR][1000 genomes]
rs13168053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13173517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13179680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13183407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13183746	0.91[ASN][1000 genomes]
rs13188884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13190614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34096155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34179982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34211578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34350522	1.00[AMR][1000 genomes]
rs34455365	1.00[AMR][1000 genomes]
rs34512505	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34617389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34788563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34792822	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34868623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34973456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34980504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34991197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35136550	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs35478855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35590922	1.00[AMR][1000 genomes]
rs35602154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35707409	1.00[AMR][1000 genomes]
rs35713376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35733458	1.00[AMR][1000 genomes]
rs35923573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35966682	1.00[AMR][1000 genomes]
rs36076336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36104847	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4533897	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs71629170	1.00[AMR][1000 genomes]
rs71629171	1.00[AMR][1000 genomes]
rs71629172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71629174	1.00[AMR][1000 genomes]
rs71629175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71629177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71629178	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71629180	1.00[AMR][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43419000-43432600	Weak transcription	Colonic Mucosa	Colon
2	chr5:43422000-43432600	Weak transcription	Pancreas	Pancrea
3	chr5:43422800-43432800	Weak transcription	NH-A	brain
4	chr5:43426400-43443600	Weak transcription	Esophagus	oesophagus
5	chr5:43427000-43432800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:43428800-43432200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:43428800-43432200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr5:43428800-43432400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr5:43428800-43432400	Weak transcription	Fetal Lung	lung
10	chr5:43428800-43432400	Weak transcription	Osteobl	bone
11	chr5:43428800-43432600	Weak transcription	NHLF	lung
12	chr5:43429400-43432200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr5:43429400-43432200	Weak transcription	Liver	Liver
14	chr5:43429400-43432400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:43429400-43460200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:43430200-43432200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:43430400-43432200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:43430400-43432200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:43430400-43432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:43430400-43432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr5:43430400-43432200	Weak transcription	Stomach Mucosa	stomach
22	chr5:43431200-43433000	Enhancers	HepG2	liver
23	chr5:43431400-43433600	Enhancers	Fetal Intestine Large	intestine
24	chr5:43431400-43433800	Enhancers	HMEC	breast
25	chr5:43431400-43434400	Enhancers	Fetal Intestine Small	intestine
26	chr5:43431600-43432200	Enhancers	Hela-S3	cervix
27	chr5:43431600-43433200	Enhancers	Rectal Mucosa Donor 29	rectum
28	chr5:43431600-43433800	Enhancers	Placenta	Placenta
29	chr5:43432000-43432400	Enhancers	A549	lung
30	chr5:43432000-43432800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:43432000-43433600	Enhancers	NHEK	skin
32	chr5:43432000-43433800	Enhancers	Rectal Mucosa Donor 31	rectum

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