Variant report

Variant	rs34512505
Chromosome Location	chr5:43433557-43433558
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:43421198..43423838-chr5:43433065..43436250,3	MCF-7	breast:
2	chr5:43431210..43434471-chr5:43482730..43486834,6	MCF-7	breast:
3	chr5:43312546..43314992-chr5:43430991..43434496,4	MCF-7	breast:
4	chr5:43431725..43434320-chr5:43436226..43437819,2	MCF-7	breast:
5	chr5:43424455..43437851-chr5:43481449..43486495,21	MCF-7	breast:
6	chr5:43431753..43434368-chr5:43450834..43452573,2	MCF-7	breast:
7	chr5:43431403..43434085-chr5:43437708..43439507,2	K562	blood:
8	chr5:43415058..43417712-chr5:43429941..43433858,3	MCF-7	breast:
9	chr5:43421017..43424119-chr5:43432639..43434257,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112972	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000151881	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10461740	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10462050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10941642	1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12653472	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12656199	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12656650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12657635	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12657724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12658205	1.00[AMR][1000 genomes]
rs12659627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13155888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13158442	1.00[AMR][1000 genomes]
rs13161668	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13161770	1.00[AMR][1000 genomes]
rs13165869	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13167838	1.00[AMR][1000 genomes]
rs13168053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13173517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13179680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13183407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13183746	0.89[ASN][1000 genomes]
rs13188884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13190614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34096155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34179982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34211578	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34350522	1.00[AMR][1000 genomes]
rs34455365	1.00[AMR][1000 genomes]
rs34617389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34788563	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34792822	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34868623	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34973456	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34980504	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34991197	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35136550	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs35171369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35478855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35590922	1.00[AMR][1000 genomes]
rs35602154	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35707409	1.00[AMR][1000 genomes]
rs35713376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35733458	1.00[AMR][1000 genomes]
rs35923573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35966682	1.00[AMR][1000 genomes]
rs36076336	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36104847	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4533897	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs71629170	1.00[AMR][1000 genomes]
rs71629171	1.00[AMR][1000 genomes]
rs71629172	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71629174	1.00[AMR][1000 genomes]
rs71629175	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs71629177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71629178	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71629180	1.00[AMR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43426400-43443600	Weak transcription	Esophagus	oesophagus
2	chr5:43429400-43460200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:43431400-43433600	Enhancers	Fetal Intestine Large	intestine
4	chr5:43431400-43433800	Enhancers	HMEC	breast
5	chr5:43431400-43434400	Enhancers	Fetal Intestine Small	intestine
6	chr5:43431600-43433800	Enhancers	Placenta	Placenta
7	chr5:43432000-43433600	Enhancers	NHEK	skin
8	chr5:43432000-43433800	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr5:43432200-43433600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr5:43432200-43433600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:43432200-43433600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:43432200-43433600	Enhancers	Stomach Mucosa	stomach
13	chr5:43432200-43433800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:43432200-43433800	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr5:43432200-43433800	Flanking Active TSS	Hela-S3	cervix
16	chr5:43432200-43434000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:43432200-43434000	Enhancers	Duodenum Mucosa	Duodenum
18	chr5:43432200-43434400	Enhancers	Liver	Liver
19	chr5:43432400-43433600	Enhancers	Fetal Lung	lung
20	chr5:43432400-43433600	Enhancers	Osteobl	bone
21	chr5:43432400-43433800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:43432400-43433800	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr5:43432400-43433800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr5:43432600-43433600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:43432600-43433600	Enhancers	HSMMtube	muscle
26	chr5:43432600-43434000	Enhancers	Pancreas	Pancrea
27	chr5:43432800-43433600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:43433000-43433600	Enhancers	Fetal Kidney	kidney
29	chr5:43433000-43433800	Enhancers	Gastric	stomach
30	chr5:43433200-43434200	Enhancers	A549	lung
31	chr5:43433200-43454400	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr5:43433200-43460200	Weak transcription	NHLF	lung
33	chr5:43433400-43434400	Enhancers	HepG2	liver
34	chr5:43433400-43443600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr5:43433400-43456000	Weak transcription	Brain Hippocampus Middle	brain

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