Variant report

Variant	rs13160431
Chromosome Location	chr5:43422480-43422481
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:43420922..43425218-chr5:43425765..43430067,4	MCF-7	breast:
2	chr5:43417747..43419820-chr5:43422249..43424504,2	K562	blood:
3	chr5:43421006..43424016-chr5:43430085..43432621,4	MCF-7	breast:
4	chr5:43413385..43415029-chr5:43421683..43423950,2	MCF-7	breast:
5	chr5:43414418..43419410-chr5:43420621..43423728,9	MCF-7	breast:
6	chr5:43421198..43423838-chr5:43433065..43436250,3	MCF-7	breast:
7	chr5:43420341..43428921-chr5:43480819..43486060,17	MCF-7	breast:
8	chr5:43420789..43422517-chr5:43480138..43481780,2	K562	blood:
9	chr5:43421016..43422893-chr5:43468500..43470011,2	MCF-7	breast:
10	chr5:43421017..43424119-chr5:43432639..43434257,5	MCF-7	breast:
11	chr5:43420821..43424326-chr5:43480907..43485286,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000151881	Chromatin interaction
ENSG00000249492	Chromatin interaction

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10066349	0.98[ASN][1000 genomes]
rs10069318	0.93[ASN][1000 genomes]
rs1025299	1.00[JPT][hapmap]
rs10461740	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10461741	1.00[JPT][hapmap]
rs10941642	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs12656248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12656650	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12657635	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12657724	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs12659627	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13154319	1.00[CEU][hapmap]
rs13155622	1.00[CEU][hapmap]
rs13155888	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13159247	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13164705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13165869	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13167785	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13167838	1.00[CEU][hapmap]
rs13167974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13168053	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13169908	1.00[CEU][hapmap]
rs13173517	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs13176917	1.00[AMR][1000 genomes]
rs13177107	1.00[JPT][hapmap]
rs13180902	1.00[CEU][hapmap]
rs13186439	1.00[CEU][hapmap]
rs13190188	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13356232	1.00[JPT][hapmap]
rs16873319	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs16873404	1.00[JPT][hapmap]
rs2042950	1.00[JPT][hapmap]
rs34057521	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34087297	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34181466	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34353246	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34388270	0.98[ASN][1000 genomes]
rs34685576	0.98[ASN][1000 genomes]
rs34880892	1.00[EUR][1000 genomes]
rs35001439	1.00[EUR][1000 genomes]
rs35141306	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35446538	1.00[EUR][1000 genomes]
rs35929451	0.98[ASN][1000 genomes]
rs36000604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36025143	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3733767	1.00[JPT][hapmap]
rs3756417	1.00[JPT][hapmap]
rs3792917	1.00[JPT][hapmap]
rs3797152	1.00[EUR][1000 genomes]
rs3806871	1.00[CEU][hapmap]
rs3822423	1.00[JPT][hapmap]
rs4264950	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4438885	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4498257	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4529199	0.95[ASN][1000 genomes]
rs4533897	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4554231	0.98[ASN][1000 genomes]
rs6862588	1.00[JPT][hapmap]
rs6889653	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6890108	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6892337	1.00[JPT][hapmap]
rs71590642	1.00[EUR][1000 genomes]
rs71610306	1.00[EUR][1000 genomes]
rs71629168	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71629169	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713529	1.00[ASN][1000 genomes]
rs7720858	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7736173	0.98[ASN][1000 genomes]
rs7736174	0.98[ASN][1000 genomes]
rs7737947	1.00[JPT][hapmap]
rs9292877	1.00[JPT][hapmap]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43419000-43432600	Weak transcription	Colonic Mucosa	Colon
2	chr5:43420600-43430200	Weak transcription	Gastric	stomach
3	chr5:43421600-43422800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:43421600-43422800	Enhancers	Fetal Kidney	kidney
5	chr5:43421600-43422800	Enhancers	NH-A	brain
6	chr5:43421600-43423000	Enhancers	NHEK	skin
7	chr5:43421600-43423400	Enhancers	Fetal Intestine Small	intestine
8	chr5:43421800-43422600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:43421800-43422800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:43421800-43422800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:43421800-43422800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:43421800-43422800	Enhancers	Duodenum Mucosa	Duodenum
13	chr5:43421800-43423000	Enhancers	Liver	Liver
14	chr5:43421800-43423000	Enhancers	Fetal Intestine Large	intestine
15	chr5:43421800-43423200	Enhancers	HMEC	breast
16	chr5:43421800-43423400	Enhancers	Hela-S3	cervix
17	chr5:43421800-43423600	Enhancers	HepG2	liver
18	chr5:43422000-43422600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:43422000-43422600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr5:43422000-43422800	Enhancers	Stomach Smooth Muscle	stomach
21	chr5:43422000-43425000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr5:43422000-43425800	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr5:43422000-43432600	Weak transcription	Pancreas	Pancrea
24	chr5:43422200-43422600	Flanking Active TSS	A549	lung
25	chr5:43422200-43422600	Enhancers	HUVEC	blood vessel
26	chr5:43422200-43422600	Enhancers	Osteobl	bone
27	chr5:43422200-43422800	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr5:43422400-43422600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr5:43422400-43422600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:43422400-43422800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr5:43422400-43422800	Weak transcription	Stomach Mucosa	stomach
32	chr5:43422400-43425800	Weak transcription	HSMM	muscle

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