Variant report

Variant	rs34181466
Chromosome Location	chr5:43412843-43412844
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr5:43412705-43413002	K562	blood:	n/a	chr5:43412852-43412863
2	CEBPB	chr5:43412743-43412984	A549	lung:	n/a	chr5:43412852-43412863
3	RFX5	chr5:43412777-43412942	K562	blood:	n/a	n/a
4	CEBPB	chr5:43412804-43412956	Hela-S3	cervix:	n/a	chr5:43412852-43412863
5	CEBPB	chr5:43412732-43412990	HepG2	liver:	n/a	chr5:43412852-43412863

No.	Distal block	Cell Line	Cell type
1	chr5:43408350..43414682-chr5:43482713..43485961,9	MCF-7	breast:
2	chr5:43395706..43398028-chr5:43412212..43414366,2	MCF-7	breast:
3	chr5:43410262..43414589-chr5:43481541..43486559,6	K562	blood:
4	chr5:43410322..43414589-chr5:43481701..43485572,7	K562	blood:

Variant related genes	Relation type
CCL28	TF binding region
ENSG00000249492	Chromatin interaction
ENSG00000151882	Chromatin interaction
ENSG00000151881	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10066349	1.00[ASN][1000 genomes]
rs10069318	0.96[ASN][1000 genomes]
rs12656248	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13159247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13160431	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13164705	1.00[EUR][1000 genomes]
rs13167785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13167974	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13190188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16873319	1.00[ASN][1000 genomes]
rs34057521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34087297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34353246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34388270	1.00[ASN][1000 genomes]
rs34685576	1.00[ASN][1000 genomes]
rs34880892	1.00[EUR][1000 genomes]
rs35001439	1.00[EUR][1000 genomes]
rs35141306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35446538	1.00[EUR][1000 genomes]
rs35929451	1.00[ASN][1000 genomes]
rs36000604	1.00[EUR][1000 genomes]
rs36025143	1.00[EUR][1000 genomes]
rs3797152	1.00[EUR][1000 genomes]
rs4264950	1.00[ASN][1000 genomes]
rs4438885	1.00[ASN][1000 genomes]
rs4498257	1.00[ASN][1000 genomes]
rs4529199	0.98[ASN][1000 genomes]
rs4554231	1.00[ASN][1000 genomes]
rs6889653	0.89[ASN][1000 genomes]
rs6890108	0.87[ASN][1000 genomes]
rs71590642	1.00[EUR][1000 genomes]
rs71610306	1.00[EUR][1000 genomes]
rs71629168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71629169	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7713529	0.98[ASN][1000 genomes]
rs7720858	1.00[ASN][1000 genomes]
rs7736173	1.00[ASN][1000 genomes]
rs7736174	1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43402200-43420200	Weak transcription	Gastric	stomach
2	chr5:43409000-43413800	Enhancers	Fetal Intestine Small	intestine
3	chr5:43410000-43413200	Enhancers	Hela-S3	cervix
4	chr5:43410200-43414800	Enhancers	Placenta	Placenta
5	chr5:43411200-43418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr5:43412000-43413200	Enhancers	Fetal Intestine Large	intestine
7	chr5:43412400-43414200	Weak transcription	K562	blood
8	chr5:43412600-43413600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr5:43412600-43414600	Enhancers	Stomach Mucosa	stomach
10	chr5:43412600-43420400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:43412600-43421600	Weak transcription	Pancreas	Pancrea
12	chr5:43412800-43413400	Enhancers	Duodenum Mucosa	Duodenum
13	chr5:43412800-43413800	Enhancers	Rectal Mucosa Donor 31	rectum

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