Variant report

Variant	rs34388270
Chromosome Location	chr5:43418694-43418695
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43417971..43419894-chr5:43557023..43559068,2	MCF-7	breast:
2	chr5:43414418..43419410-chr5:43420621..43423728,9	MCF-7	breast:
3	chr5:43416364..43419275-chr5:43427305..43429059,2	MCF-7	breast:
4	chr5:43418413..43420435-chr5:43484021..43485545,2	MCF-7	breast:
5	chr5:43417747..43419820-chr5:43422249..43424504,2	K562	blood:

Variant related genes	Relation type
ENSG00000172239	Chromatin interaction
ENSG00000249492	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10066349	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069318	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12656248	0.98[ASN][1000 genomes]
rs13159247	1.00[ASN][1000 genomes]
rs13160431	0.98[ASN][1000 genomes]
rs13167785	1.00[ASN][1000 genomes]
rs13167974	1.00[ASN][1000 genomes]
rs13190188	1.00[ASN][1000 genomes]
rs16873315	0.87[AFR][1000 genomes]
rs16873319	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34057521	1.00[ASN][1000 genomes]
rs34087297	0.98[ASN][1000 genomes]
rs34181466	1.00[ASN][1000 genomes]
rs34353246	0.93[ASN][1000 genomes]
rs34685576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141306	1.00[ASN][1000 genomes]
rs35929451	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4264950	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438885	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4498257	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4529199	0.98[ASN][1000 genomes]
rs4554231	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56729517	0.85[AFR][1000 genomes]
rs6886399	0.87[AFR][1000 genomes]
rs6889653	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6890108	0.87[ASN][1000 genomes]
rs71629168	1.00[ASN][1000 genomes]
rs71629169	0.98[ASN][1000 genomes]
rs7713529	0.98[ASN][1000 genomes]
rs7720858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7731345	0.85[AFR][1000 genomes]
rs7736173	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43402200-43420200	Weak transcription	Gastric	stomach
2	chr5:43412600-43420400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:43412600-43421600	Weak transcription	Pancreas	Pancrea
4	chr5:43417200-43420200	Weak transcription	HepG2	liver
5	chr5:43417200-43421600	Weak transcription	Fetal Intestine Small	intestine
6	chr5:43417200-43421800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:43417200-43421800	Weak transcription	Hela-S3	cervix
8	chr5:43417400-43419800	Weak transcription	Stomach Mucosa	stomach
9	chr5:43417600-43420200	Weak transcription	K562	blood
10	chr5:43417600-43421600	Weak transcription	Small Intestine	intestine
11	chr5:43418200-43419000	Enhancers	Colonic Mucosa	Colon
12	chr5:43418400-43419000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:43418600-43419400	Enhancers	Rectal Mucosa Donor 31	rectum

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