Variant report

No.	Distal block	Cell Line	Cell type
1	chr5:43408350..43414682-chr5:43482713..43485961,9	MCF-7	breast:
2	chr5:43395706..43398028-chr5:43412212..43414366,2	MCF-7	breast:
3	chr5:43410262..43414589-chr5:43481541..43486559,6	K562	blood:
4	chr5:43410322..43414589-chr5:43481701..43485572,7	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10066349	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10069318	0.87[AFR][1000 genomes]
rs16873315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873319	0.89[MKK][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes]
rs34388270	0.87[AFR][1000 genomes]
rs34685576	0.84[AFR][1000 genomes]
rs35929451	0.92[AFR][1000 genomes]
rs4264950	0.92[ASW][hapmap];0.94[LWK][hapmap];0.89[MKK][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs4438885	1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4498257	0.91[YRI][hapmap];0.87[AFR][1000 genomes]
rs4529199	0.89[AFR][1000 genomes]
rs4554231	0.93[AFR][1000 genomes]
rs4616901	0.87[AFR][1000 genomes]
rs56729517	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6451691	0.84[AMR][1000 genomes]
rs6862604	0.87[EUR][1000 genomes]
rs6867927	0.80[YRI][hapmap]
rs6889653	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs6890419	0.85[YRI][hapmap]
rs6896527	0.85[YRI][hapmap]
rs7720858	0.92[ASW][hapmap];0.94[LWK][hapmap];0.89[MKK][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes]
rs7728139	0.80[YRI][hapmap]
rs7731345	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7736174	0.92[AFR][1000 genomes]

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43402200-43420200	Weak transcription	Gastric	stomach
2	chr5:43409000-43413800	Enhancers	Fetal Intestine Small	intestine
3	chr5:43410200-43414800	Enhancers	Placenta	Placenta
4	chr5:43411200-43418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:43412400-43414200	Weak transcription	K562	blood
6	chr5:43412600-43413600	Enhancers	Rectal Mucosa Donor 29	rectum
7	chr5:43412600-43414600	Enhancers	Stomach Mucosa	stomach
8	chr5:43412600-43420400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:43412600-43421600	Weak transcription	Pancreas	Pancrea
10	chr5:43412800-43413400	Enhancers	Duodenum Mucosa	Duodenum
11	chr5:43412800-43413800	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:43413200-43415800	Weak transcription	Hela-S3	cervix

Quick Search: