Variant report

Variant	rs34087297
Chromosome Location	chr5:43417400-43417401
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr5:43416746-43417438	T-47D	breast:	n/a	chr5:43416994-43417011 chr5:43416993-43417010
2	ESR1	chr5:43416687-43417432	T-47D	breast:	n/a	chr5:43416994-43417011 chr5:43416993-43417010

No.	Distal block	Cell Line	Cell type
1	chr5:43414938..43417802-chr5:43484116..43485960,3	K562	blood:
2	chr5:43414418..43419410-chr5:43420621..43423728,9	MCF-7	breast:
3	chr5:43415058..43417712-chr5:43429941..43433858,3	MCF-7	breast:
4	chr5:43416364..43419275-chr5:43427305..43429059,2	MCF-7	breast:
5	chr5:43415947..43418426-chr5:43483212..43485985,2	MCF-7	breast:
6	chr5:43124778..43127199-chr5:43415095..43418069,2	K562	blood:
7	chr5:43416042..43417802-chr5:43484116..43485960,3	K562	blood:
8	chr5:43414209..43417437-chr5:43419319..43422239,3	K562	blood:

Variant related genes	Relation type
CCL28	TF binding region
ENSG00000249492	Chromatin interaction
ENSG00000151881	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10066349	0.98[ASN][1000 genomes]
rs10069318	0.93[ASN][1000 genomes]
rs12656248	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13159247	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13160431	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13164705	1.00[EUR][1000 genomes]
rs13167785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13167974	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13190188	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16873319	0.98[ASN][1000 genomes]
rs34057521	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34181466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34353246	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34388270	0.98[ASN][1000 genomes]
rs34685576	0.98[ASN][1000 genomes]
rs34880892	1.00[EUR][1000 genomes]
rs35001439	1.00[EUR][1000 genomes]
rs35141306	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35446538	1.00[EUR][1000 genomes]
rs35929451	0.98[ASN][1000 genomes]
rs36000604	1.00[EUR][1000 genomes]
rs36025143	1.00[EUR][1000 genomes]
rs3797152	1.00[EUR][1000 genomes]
rs4264950	0.98[ASN][1000 genomes]
rs4438885	0.98[ASN][1000 genomes]
rs4498257	0.98[ASN][1000 genomes]
rs4529199	0.95[ASN][1000 genomes]
rs4554231	0.98[ASN][1000 genomes]
rs6889653	0.87[ASN][1000 genomes]
rs6890108	0.89[ASN][1000 genomes]
rs71590642	1.00[EUR][1000 genomes]
rs71610306	1.00[EUR][1000 genomes]
rs71629168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71629169	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7713529	1.00[ASN][1000 genomes]
rs7720858	0.98[ASN][1000 genomes]
rs7736173	0.98[ASN][1000 genomes]
rs7736174	0.98[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43402200-43420200	Weak transcription	Gastric	stomach
2	chr5:43411200-43418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:43412600-43420400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:43412600-43421600	Weak transcription	Pancreas	Pancrea
5	chr5:43415800-43417400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr5:43416400-43417400	Enhancers	Stomach Mucosa	stomach
7	chr5:43416600-43417600	Enhancers	Small Intestine	intestine
8	chr5:43416600-43417600	Enhancers	K562	blood
9	chr5:43417200-43418600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:43417200-43420200	Weak transcription	HepG2	liver
11	chr5:43417200-43421600	Weak transcription	Fetal Intestine Small	intestine
12	chr5:43417200-43421800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr5:43417200-43421800	Weak transcription	Hela-S3	cervix
14	chr5:43417400-43419800	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links