Variant report

Variant	rs28489749
Chromosome Location	chr6:142776197-142776198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10223419	1.00[AFR][1000 genomes]
rs13437159	0.90[AFR][1000 genomes]
rs9321864	1.00[AFR][1000 genomes]
rs9321868	1.00[AFR][1000 genomes]
rs9484622	1.00[AFR][1000 genomes]
rs9484623	1.00[AFR][1000 genomes]
rs9484624	1.00[AFR][1000 genomes]
rs9484625	1.00[AFR][1000 genomes]
rs9484626	1.00[AFR][1000 genomes]
rs9484637	0.90[AFR][1000 genomes]
rs9484642	0.90[AFR][1000 genomes]
rs9484643	1.00[AFR][1000 genomes]
rs9496335	1.00[AFR][1000 genomes]
rs9496337	1.00[AFR][1000 genomes]
rs9496339	1.00[AFR][1000 genomes]
rs9496340	1.00[AFR][1000 genomes]
rs9496342	1.00[AFR][1000 genomes]
rs9496344	1.00[AFR][1000 genomes]
rs9496345	1.00[AFR][1000 genomes]
rs9496347	0.81[AFR][1000 genomes]
rs9496348	1.00[AFR][1000 genomes]
rs9496352	1.00[AFR][1000 genomes]
rs9496353	1.00[AFR][1000 genomes]
rs9496366	1.00[AFR][1000 genomes]
rs9496370	1.00[AFR][1000 genomes]
rs9496377	0.90[AFR][1000 genomes]
rs9496380	0.90[AFR][1000 genomes]
rs9496382	0.90[AFR][1000 genomes]
rs9496389	1.00[AFR][1000 genomes]
rs9496390	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142748000-142782600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:142751600-142780000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:142766000-142777600	Weak transcription	HSMM	muscle
4	chr6:142766200-142782800	Weak transcription	NHLF	lung
5	chr6:142766400-142778000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:142768000-142777400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:142769800-142777200	Weak transcription	Fetal Intestine Large	intestine
8	chr6:142769800-142779000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:142772800-142776800	Weak transcription	HepG2	liver
10	chr6:142773000-142776600	Weak transcription	Placenta	Placenta
11	chr6:142773600-142780000	Weak transcription	Fetal Lung	lung
12	chr6:142773800-142780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:142774600-142780400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:142774800-142780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:142775000-142776800	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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