Variant report

Variant	rs9484626
Chromosome Location	chr6:142661663-142661664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10223419	1.00[AFR][1000 genomes]
rs13437159	0.90[AFR][1000 genomes]
rs28489749	1.00[AFR][1000 genomes]
rs9321864	1.00[AFR][1000 genomes]
rs9321868	1.00[AFR][1000 genomes]
rs9484622	1.00[AFR][1000 genomes]
rs9484623	1.00[AFR][1000 genomes]
rs9484624	1.00[AFR][1000 genomes]
rs9484625	1.00[AFR][1000 genomes]
rs9484637	0.90[AFR][1000 genomes]
rs9484642	0.90[AFR][1000 genomes]
rs9484643	1.00[AFR][1000 genomes]
rs9496335	1.00[AFR][1000 genomes]
rs9496337	1.00[AFR][1000 genomes]
rs9496339	1.00[AFR][1000 genomes]
rs9496340	1.00[AFR][1000 genomes]
rs9496342	1.00[AFR][1000 genomes]
rs9496344	1.00[AFR][1000 genomes]
rs9496345	1.00[AFR][1000 genomes]
rs9496347	0.81[AFR][1000 genomes]
rs9496348	1.00[AFR][1000 genomes]
rs9496352	1.00[AFR][1000 genomes]
rs9496353	1.00[AFR][1000 genomes]
rs9496366	1.00[AFR][1000 genomes]
rs9496370	1.00[AFR][1000 genomes]
rs9496377	0.90[AFR][1000 genomes]
rs9496380	0.90[AFR][1000 genomes]
rs9496382	0.90[AFR][1000 genomes]
rs9496389	1.00[AFR][1000 genomes]
rs9496390	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830825	chr6:142585242-142752575	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142654200-142666400	Weak transcription	HMEC	breast
2	chr6:142654200-142668800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:142654400-142666200	Weak transcription	NHEK	skin
4	chr6:142654800-142676600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:142657400-142678800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:142657600-142665800	Weak transcription	NHLF	lung
7	chr6:142659000-142666000	Weak transcription	Liver	Liver
8	chr6:142660000-142662200	Enhancers	A549	lung
9	chr6:142660400-142662200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:142660400-142662200	Enhancers	Fetal Lung	lung
11	chr6:142660600-142662000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:142660600-142662400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:142660800-142662200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:142660800-142662400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr6:142661000-142662000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:142661000-142662000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr6:142661400-142662200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:142661600-142661800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:142661600-142661800	Genic enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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